BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TTTGAAAGAATATCTCGAGATATTCTTTCAAACCCTCCGC (evalue = 10)
Length=40
Score E
Sequences producing significant alignments: (Bits) Value
gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52... 42.1 0.003
gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52... 42.1 0.003
gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52... 42.1 0.003
gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 li... 42.1 0.003
gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 li... 42.1 0.003
gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 li... 42.1 0.003
gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 li... 42.1 0.003
gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52... 42.1 0.003
gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 li... 42.1 0.003
gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 li... 42.1 0.003
gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 li... 42.1 0.003
> gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 8, mRNA
Length=2230
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 914 ATATTCTTTCAAACCCTCCGC 894
> gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 7, mRNA
Length=2284
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 968 ATATTCTTTCAAACCCTCCGC 948
> gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 9, mRNA
Length=2197
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 881 ATATTCTTTCAAACCCTCCGC 861
> gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 6, mRNA
Length=2299
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 983 ATATTCTTTCAAACCCTCCGC 963
> gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 4, mRNA
Length=2341
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 1025 ATATTCTTTCAAACCCTCCGC 1005
> gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 2, mRNA
Length=2368
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 1052 ATATTCTTTCAAACCCTCCGC 1032
> gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 11, non-coding RNA
Length=2328
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 1012 ATATTCTTTCAAACCCTCCGC 992
> gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 10, mRNA
Length=2310
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 994 ATATTCTTTCAAACCCTCCGC 974
> gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 5, mRNA
Length=2359
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 1043 ATATTCTTTCAAACCCTCCGC 1023
> gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 3, mRNA
Length=2401
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 1085 ATATTCTTTCAAACCCTCCGC 1065
> gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 1, mRNA
Length=2428
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 20 ATATTCTTTCAAACCCTCCGC 40
|||||||||||||||||||||
Sbjct 1112 ATATTCTTTCAAACCCTCCGC 1092
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 13434729157
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2