BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TTTCGGAGTACATGGGCAAT (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1022433202|ref|NM_001323983.1| Homo sapiens catenin alpha 1 ... 40.1 0.002
gi|1022434009|ref|NM_001290309.2| Homo sapiens catenin alpha 1 ... 40.1 0.002
gi|1022432228|ref|NM_001290310.2| Homo sapiens catenin alpha 1 ... 40.1 0.002
gi|1022431655|ref|NM_001323986.1| Homo sapiens catenin alpha 1 ... 40.1 0.002
gi|1022436142|ref|NM_001323985.1| Homo sapiens catenin alpha 1 ... 40.1 0.002
gi|1022430604|ref|NM_001903.4| Homo sapiens catenin alpha 1 (CT... 40.1 0.002
gi|1022436549|ref|NM_001290307.2| Homo sapiens catenin alpha 1 ... 40.1 0.002
gi|1022434282|ref|NM_001323984.1| Homo sapiens catenin alpha 1 ... 40.1 0.002
gi|1022434685|ref|NM_001323982.1| Homo sapiens catenin alpha 1 ... 40.1 0.002
gi|1034680787|ref|XR_001731476.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034680788|ref|XR_001731477.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034680789|ref|XR_001731478.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034680786|ref|XR_001731475.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034571199|ref|XR_001747565.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034571200|ref|XR_001747566.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034571201|ref|XR_001747567.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034571198|ref|XR_001747564.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|311771701|ref|NM_001025930.3| Homo sapiens tubulin tyrosine ... 28.2 7.3
gi|311771654|ref|NR_037162.1| Homo sapiens tubulin tyrosine lig... 28.2 7.3
gi|311771693|ref|NM_001198793.1| Homo sapiens ARPC4-TTLL3 readt... 28.2 7.3
gi|311893284|ref|NM_006047.5| Homo sapiens RNA binding motif pr... 28.2 7.3
gi|311893285|ref|NM_152838.3| Homo sapiens RNA binding motif pr... 28.2 7.3
gi|312032347|ref|NM_001198840.1| Homo sapiens RNA binding motif... 28.2 7.3
gi|311893286|ref|NM_001198838.1| Homo sapiens RNA binding motif... 28.2 7.3
gi|311893371|ref|NM_003915.5| Homo sapiens copine 1 (CPNE1), tr... 28.2 7.3
> gi|1022433202|ref|NM_001323983.1| Homo sapiens catenin alpha
1 (CTNNA1), transcript variant 7, mRNA
Length=3945
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTTCGGAGTACATGGGCAAT 20
||||||||||||||||||||
Sbjct 1322 TTTCGGAGTACATGGGCAAT 1341
> gi|1022434009|ref|NM_001290309.2| Homo sapiens catenin alpha
1 (CTNNA1), transcript variant 3, mRNA
Length=3605
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTTCGGAGTACATGGGCAAT 20
||||||||||||||||||||
Sbjct 974 TTTCGGAGTACATGGGCAAT 993
> gi|1022432228|ref|NM_001290310.2| Homo sapiens catenin alpha
1 (CTNNA1), transcript variant 4, mRNA
Length=3638
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTTCGGAGTACATGGGCAAT 20
||||||||||||||||||||
Sbjct 1007 TTTCGGAGTACATGGGCAAT 1026
> gi|1022431655|ref|NM_001323986.1| Homo sapiens catenin alpha
1 (CTNNA1), transcript variant 10, mRNA
Length=3700
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTTCGGAGTACATGGGCAAT 20
||||||||||||||||||||
Sbjct 1170 TTTCGGAGTACATGGGCAAT 1189
> gi|1022436142|ref|NM_001323985.1| Homo sapiens catenin alpha
1 (CTNNA1), transcript variant 9, mRNA
Length=3766
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTTCGGAGTACATGGGCAAT 20
||||||||||||||||||||
Sbjct 1170 TTTCGGAGTACATGGGCAAT 1189
> gi|1022430604|ref|NM_001903.4| Homo sapiens catenin alpha 1 (CTNNA1),
transcript variant 1, mRNA
Length=3801
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTTCGGAGTACATGGGCAAT 20
||||||||||||||||||||
Sbjct 1170 TTTCGGAGTACATGGGCAAT 1189
> gi|1022436549|ref|NM_001290307.2| Homo sapiens catenin alpha
1 (CTNNA1), transcript variant 2, mRNA
Length=3872
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTTCGGAGTACATGGGCAAT 20
||||||||||||||||||||
Sbjct 1170 TTTCGGAGTACATGGGCAAT 1189
> gi|1022434282|ref|NM_001323984.1| Homo sapiens catenin alpha
1 (CTNNA1), transcript variant 8, mRNA
Length=3811
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTTCGGAGTACATGGGCAAT 20
||||||||||||||||||||
Sbjct 1188 TTTCGGAGTACATGGGCAAT 1207
> gi|1022434685|ref|NM_001323982.1| Homo sapiens catenin alpha
1 (CTNNA1), transcript variant 6, mRNA
Length=4263
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTTCGGAGTACATGGGCAAT 20
||||||||||||||||||||
Sbjct 1640 TTTCGGAGTACATGGGCAAT 1659
> gi|1034680787|ref|XR_001731476.1| PREDICTED: Homo sapiens uncharacterized
LOC101927300 (LOC101927300), transcript variant
X2, ncRNA
Length=5134
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTTCGGAGTACATG 14
||||||||||||||
Sbjct 2536 TTTCGGAGTACATG 2523
> gi|1034680788|ref|XR_001731477.1| PREDICTED: Homo sapiens uncharacterized
LOC101927300 (LOC101927300), transcript variant
X3, ncRNA
Length=5153
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTTCGGAGTACATG 14
||||||||||||||
Sbjct 2555 TTTCGGAGTACATG 2542
> gi|1034680789|ref|XR_001731478.1| PREDICTED: Homo sapiens uncharacterized
LOC101927300 (LOC101927300), transcript variant
X4, ncRNA
Length=5709
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTTCGGAGTACATG 14
||||||||||||||
Sbjct 3111 TTTCGGAGTACATG 3098
> gi|1034680786|ref|XR_001731475.1| PREDICTED: Homo sapiens uncharacterized
LOC101927300 (LOC101927300), transcript variant
X1, ncRNA
Length=5817
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTTCGGAGTACATG 14
||||||||||||||
Sbjct 3219 TTTCGGAGTACATG 3206
> gi|1034571199|ref|XR_001747565.1| PREDICTED: Homo sapiens uncharacterized
LOC101927300 (LOC101927300), transcript variant
X2, ncRNA
Length=5134
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTTCGGAGTACATG 14
||||||||||||||
Sbjct 2536 TTTCGGAGTACATG 2523
> gi|1034571200|ref|XR_001747566.1| PREDICTED: Homo sapiens uncharacterized
LOC101927300 (LOC101927300), transcript variant
X3, ncRNA
Length=5153
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTTCGGAGTACATG 14
||||||||||||||
Sbjct 2555 TTTCGGAGTACATG 2542
> gi|1034571201|ref|XR_001747567.1| PREDICTED: Homo sapiens uncharacterized
LOC101927300 (LOC101927300), transcript variant
X4, ncRNA
Length=5709
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTTCGGAGTACATG 14
||||||||||||||
Sbjct 3111 TTTCGGAGTACATG 3098
> gi|1034571198|ref|XR_001747564.1| PREDICTED: Homo sapiens uncharacterized
LOC101927300 (LOC101927300), transcript variant
X1, ncRNA
Length=5817
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTTCGGAGTACATG 14
||||||||||||||
Sbjct 3219 TTTCGGAGTACATG 3206
> gi|311771701|ref|NM_001025930.3| Homo sapiens tubulin tyrosine
ligase like 3 (TTLL3), transcript variant 1, mRNA
Length=3662
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TCGGAGTACATGGG 16
||||||||||||||
Sbjct 2234 TCGGAGTACATGGG 2221
> gi|311771654|ref|NR_037162.1| Homo sapiens tubulin tyrosine ligase
like 3 (TTLL3), transcript variant 2, non-coding RNA
Length=4160
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TCGGAGTACATGGG 16
||||||||||||||
Sbjct 2546 TCGGAGTACATGGG 2533
> gi|311771693|ref|NM_001198793.1| Homo sapiens ARPC4-TTLL3 readthrough
(ARPC4-TTLL3), mRNA
Length=3987
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TCGGAGTACATGGG 16
||||||||||||||
Sbjct 2373 TCGGAGTACATGGG 2360
> gi|311893284|ref|NM_006047.5| Homo sapiens RNA binding motif
protein 12 (RBM12), transcript variant 1, mRNA
Length=6724
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 AGTACATGGGCAAT 20
||||||||||||||
Sbjct 1782 AGTACATGGGCAAT 1795
> gi|311893285|ref|NM_152838.3| Homo sapiens RNA binding motif
protein 12 (RBM12), transcript variant 2, mRNA
Length=6692
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 AGTACATGGGCAAT 20
||||||||||||||
Sbjct 1750 AGTACATGGGCAAT 1763
> gi|312032347|ref|NM_001198840.1| Homo sapiens RNA binding motif
protein 12 (RBM12), transcript variant 4, mRNA
Length=6639
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 AGTACATGGGCAAT 20
||||||||||||||
Sbjct 1697 AGTACATGGGCAAT 1710
> gi|311893286|ref|NM_001198838.1| Homo sapiens RNA binding motif
protein 12 (RBM12), transcript variant 3, mRNA
Length=6682
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 AGTACATGGGCAAT 20
||||||||||||||
Sbjct 1740 AGTACATGGGCAAT 1753
> gi|311893371|ref|NM_003915.5| Homo sapiens copine 1 (CPNE1),
transcript variant 3, mRNA
Length=2207
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 AGTACATGGGCAAT 20
||||||||||||||
Sbjct 65 AGTACATGGGCAAT 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2