BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TTTCAAACCCTCCGCTTTTTT (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52... 30.2 2.3
gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52... 30.2 2.3
gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52... 30.2 2.3
gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 li... 30.2 2.3
gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 li... 30.2 2.3
gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 li... 30.2 2.3
gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 li... 30.2 2.3
gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52... 30.2 2.3
gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 li... 30.2 2.3
gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 li... 30.2 2.3
gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 li... 30.2 2.3
gi|1034648867|ref|XM_011535559.2| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034648863|ref|XM_017010388.1| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034648862|ref|XM_011535556.2| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034648859|ref|XM_011535555.2| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034648852|ref|XM_017010384.1| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034648857|ref|XM_017010386.1| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034648854|ref|XR_942337.2| PREDICTED: Homo sapiens adenylat... 28.2 9.2
gi|1034648847|ref|XM_011535550.2| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034648848|ref|XM_006715376.3| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034648851|ref|XM_011535554.2| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034648850|ref|XM_011535553.2| PREDICTED: Homo sapiens adeny... 28.2 9.2
gi|1034581140|ref|XR_944677.2| PREDICTED: Homo sapiens SDS3 hom... 28.2 9.2
> gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 8, mRNA
Length=2230
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 908 TTTCAAACCCTCCGC 894
> gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 7, mRNA
Length=2284
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 962 TTTCAAACCCTCCGC 948
> gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 9, mRNA
Length=2197
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 875 TTTCAAACCCTCCGC 861
> gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 6, mRNA
Length=2299
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 977 TTTCAAACCCTCCGC 963
> gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 4, mRNA
Length=2341
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 1019 TTTCAAACCCTCCGC 1005
> gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 2, mRNA
Length=2368
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 1046 TTTCAAACCCTCCGC 1032
> gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 11, non-coding RNA
Length=2328
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 1006 TTTCAAACCCTCCGC 992
> gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 10, mRNA
Length=2310
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 988 TTTCAAACCCTCCGC 974
> gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 5, mRNA
Length=2359
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 1037 TTTCAAACCCTCCGC 1023
> gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 3, mRNA
Length=2401
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 1079 TTTCAAACCCTCCGC 1065
> gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 1, mRNA
Length=2428
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 TTTCAAACCCTCCGC 15
|||||||||||||||
Sbjct 1106 TTTCAAACCCTCCGC 1092
> gi|1034648867|ref|XM_011535559.2| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X16, mRNA
Length=4073
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648863|ref|XM_017010388.1| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X13, mRNA
Length=5699
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648862|ref|XM_011535556.2| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X12, mRNA
Length=5141
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648859|ref|XM_011535555.2| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X10, mRNA
Length=5765
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648852|ref|XM_017010384.1| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X6, mRNA
Length=6483
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648857|ref|XM_017010386.1| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X9, mRNA
Length=6438
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648854|ref|XR_942337.2| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X7, misc_RNA
Length=6090
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648847|ref|XM_011535550.2| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X1, mRNA
Length=7207
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648848|ref|XM_006715376.3| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X2, mRNA
Length=7192
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648851|ref|XM_011535554.2| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X5, mRNA
Length=6886
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034648850|ref|XM_011535553.2| PREDICTED: Homo sapiens adenylate
kinase 9 (AK9), transcript variant X4, mRNA
Length=6990
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 CAAACCCTCCGCTTTTTT 21
|||||| |||||||||||
Sbjct 135 CAAACCTTCCGCTTTTTT 118
> gi|1034581140|ref|XR_944677.2| PREDICTED: Homo sapiens SDS3 homolog,
SIN3A corepressor complex component (SUDS3), transcript
variant X2, misc_RNA
Length=8063
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCAAACCCTCCGC 15
||||||||||||||
Sbjct 3011 TTCAAACCCTCCGC 3024
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2