BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TTGGTATCCGAGAAAGTCAGAAG (evalue = 10)
Length=23
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034675171|ref|XM_017029801.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675164|ref|XM_011545583.2| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675163|ref|XM_005274594.4| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675159|ref|XM_017029796.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675156|ref|XM_017029795.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675149|ref|XM_017029793.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675139|ref|XM_017029788.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|768032743|ref|XM_011545579.1| PREDICTED: Homo sapiens zinc f... 46.1 5e-05
gi|1034675141|ref|XM_017029789.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675151|ref|XM_017029794.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|296010876|ref|NM_003410.3| Homo sapiens zinc finger protein,... 46.1 5e-05
gi|296010879|ref|NM_001178085.1| Homo sapiens zinc finger prote... 46.1 5e-05
gi|296010877|ref|NM_001178084.1| Homo sapiens zinc finger prote... 46.1 5e-05
gi|296010881|ref|NM_001178086.1| Homo sapiens zinc finger prote... 46.1 5e-05
gi|296010907|ref|NM_001178095.1| Homo sapiens zinc finger prote... 46.1 5e-05
gi|1034675165|ref|XM_017029798.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675161|ref|XM_017029797.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675169|ref|XM_017029800.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675153|ref|XM_005274591.4| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675143|ref|XM_017029790.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675138|ref|XM_006724513.3| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675145|ref|XM_017029791.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675158|ref|XM_006724515.3| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675154|ref|XM_011545581.2| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675147|ref|XM_017029792.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|768032740|ref|XM_011545578.1| PREDICTED: Homo sapiens zinc f... 46.1 5e-05
gi|1034675167|ref|XM_017029799.1| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|1034675155|ref|XM_005274592.3| PREDICTED: Homo sapiens zinc ... 46.1 5e-05
gi|223717964|ref|NM_001145275.1| Homo sapiens zinc finger prote... 38.2 0.013
gi|223890138|ref|NM_003411.3| Homo sapiens zinc finger protein,... 38.2 0.013
gi|1034676396|ref|XM_017030075.1| PREDICTED: Homo sapiens zinc ... 38.2 0.013
gi|223717972|ref|NM_001145276.1| Homo sapiens zinc finger prote... 38.2 0.013
gi|1034676401|ref|XM_017030076.1| PREDICTED: Homo sapiens zinc ... 38.2 0.013
gi|768040675|ref|XM_005262570.2| PREDICTED: Homo sapiens zinc f... 38.2 0.013
gi|1034676399|ref|XM_011531474.2| PREDICTED: Homo sapiens zinc ... 38.2 0.013
gi|1034676398|ref|XM_011531473.2| PREDICTED: Homo sapiens zinc ... 38.2 0.013
gi|1034676400|ref|XM_011531475.2| PREDICTED: Homo sapiens zinc ... 38.2 0.013
gi|1034676403|ref|XM_017030077.1| PREDICTED: Homo sapiens zinc ... 38.2 0.013
gi|40807470|ref|NM_003594.3| Homo sapiens transcription termina... 30.2 3.3
gi|1034562582|ref|XR_001737491.1| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562579|ref|XM_005271277.3| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562574|ref|XM_017002554.1| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562577|ref|XM_017002555.1| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562581|ref|XR_001737490.1| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562572|ref|XM_017002553.1| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562570|ref|XM_017002552.1| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562576|ref|XM_011542303.2| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562568|ref|XM_017002551.1| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562566|ref|XM_017002550.1| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562564|ref|XM_017002549.1| PREDICTED: Homo sapiens trans... 30.2 3.3
gi|1034562580|ref|XR_001737489.1| PREDICTED: Homo sapiens trans... 30.2 3.3
> gi|1034675171|ref|XM_017029801.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X23, mRNA
Length=7022
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 1744 TTGGTATCCGAGAAAGTCAGAAG 1722
> gi|1034675164|ref|XM_011545583.2| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X19, mRNA
Length=7159
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 1881 TTGGTATCCGAGAAAGTCAGAAG 1859
> gi|1034675163|ref|XM_005274594.4| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X18, mRNA
Length=8609
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 3331 TTGGTATCCGAGAAAGTCAGAAG 3309
> gi|1034675159|ref|XM_017029796.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X16, mRNA
Length=7184
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 1906 TTGGTATCCGAGAAAGTCAGAAG 1884
> gi|1034675156|ref|XM_017029795.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X14, mRNA
Length=7173
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 1895 TTGGTATCCGAGAAAGTCAGAAG 1873
> gi|1034675149|ref|XM_017029793.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X8, mRNA
Length=7290
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2012 TTGGTATCCGAGAAAGTCAGAAG 1990
> gi|1034675139|ref|XM_017029788.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X3, mRNA
Length=7756
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2478 TTGGTATCCGAGAAAGTCAGAAG 2456
> gi|768032743|ref|XM_011545579.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X9, mRNA
Length=7503
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2225 TTGGTATCCGAGAAAGTCAGAAG 2203
> gi|1034675141|ref|XM_017029789.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X4, mRNA
Length=8318
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 3040 TTGGTATCCGAGAAAGTCAGAAG 3018
> gi|1034675151|ref|XM_017029794.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X10, mRNA
Length=7544
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2266 TTGGTATCCGAGAAAGTCAGAAG 2244
> gi|296010876|ref|NM_003410.3| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 1, mRNA
Length=7604
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2160 TTGGTATCCGAGAAAGTCAGAAG 2138
> gi|296010879|ref|NM_001178085.1| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 3, mRNA
Length=7740
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2296 TTGGTATCCGAGAAAGTCAGAAG 2274
> gi|296010877|ref|NM_001178084.1| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 2, mRNA
Length=7396
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 1952 TTGGTATCCGAGAAAGTCAGAAG 1930
> gi|296010881|ref|NM_001178086.1| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 4, mRNA
Length=6801
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 1357 TTGGTATCCGAGAAAGTCAGAAG 1335
> gi|296010907|ref|NM_001178095.1| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 5, mRNA
Length=7534
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2090 TTGGTATCCGAGAAAGTCAGAAG 2068
> gi|1034675165|ref|XM_017029798.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X20, mRNA
Length=7404
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2126 TTGGTATCCGAGAAAGTCAGAAG 2104
> gi|1034675161|ref|XM_017029797.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X17, mRNA
Length=7784
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2506 TTGGTATCCGAGAAAGTCAGAAG 2484
> gi|1034675169|ref|XM_017029800.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X22, mRNA
Length=7265
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 1987 TTGGTATCCGAGAAAGTCAGAAG 1965
> gi|1034675153|ref|XM_005274591.4| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X11, mRNA
Length=7604
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2326 TTGGTATCCGAGAAAGTCAGAAG 2304
> gi|1034675143|ref|XM_017029790.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X5, mRNA
Length=7723
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2445 TTGGTATCCGAGAAAGTCAGAAG 2423
> gi|1034675138|ref|XM_006724513.3| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X1, mRNA
Length=7833
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2555 TTGGTATCCGAGAAAGTCAGAAG 2533
> gi|1034675145|ref|XM_017029791.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X6, mRNA
Length=7613
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2335 TTGGTATCCGAGAAAGTCAGAAG 2313
> gi|1034675158|ref|XM_006724515.3| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X15, mRNA
Length=7694
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2416 TTGGTATCCGAGAAAGTCAGAAG 2394
> gi|1034675154|ref|XM_011545581.2| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X12, mRNA
Length=7645
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2367 TTGGTATCCGAGAAAGTCAGAAG 2345
> gi|1034675147|ref|XM_017029792.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X7, mRNA
Length=7492
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2214 TTGGTATCCGAGAAAGTCAGAAG 2192
> gi|768032740|ref|XM_011545578.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X2, mRNA
Length=7715
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2437 TTGGTATCCGAGAAAGTCAGAAG 2415
> gi|1034675167|ref|XM_017029799.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X21, mRNA
Length=7278
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2000 TTGGTATCCGAGAAAGTCAGAAG 1978
> gi|1034675155|ref|XM_005274592.3| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X13, mRNA
Length=7419
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||||||||||||||||||
Sbjct 2141 TTGGTATCCGAGAAAGTCAGAAG 2119
> gi|223717964|ref|NM_001145275.1| Homo sapiens zinc finger protein,
Y-linked (ZFY), transcript variant 2, mRNA
Length=5017
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 1920 TTGGTATCTGAGAAAGTCAGAAG 1898
> gi|223890138|ref|NM_003411.3| Homo sapiens zinc finger protein,
Y-linked (ZFY), transcript variant 1, mRNA
Length=5259
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 2162 TTGGTATCTGAGAAAGTCAGAAG 2140
> gi|1034676396|ref|XM_017030075.1| PREDICTED: Homo sapiens zinc
finger protein, Y-linked (ZFY), transcript variant X2, mRNA
Length=5121
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 2041 TTGGTATCTGAGAAAGTCAGAAG 2019
> gi|223717972|ref|NM_001145276.1| Homo sapiens zinc finger protein,
Y-linked (ZFY), transcript variant 3, mRNA
Length=4769
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 1672 TTGGTATCTGAGAAAGTCAGAAG 1650
> gi|1034676401|ref|XM_017030076.1| PREDICTED: Homo sapiens zinc
finger protein, Y-linked (ZFY), transcript variant X6, mRNA
Length=5172
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 2092 TTGGTATCTGAGAAAGTCAGAAG 2070
> gi|768040675|ref|XM_005262570.2| PREDICTED: Homo sapiens zinc
finger protein, Y-linked (ZFY), transcript variant X1, mRNA
Length=5325
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 2245 TTGGTATCTGAGAAAGTCAGAAG 2223
> gi|1034676399|ref|XM_011531474.2| PREDICTED: Homo sapiens zinc
finger protein, Y-linked (ZFY), transcript variant X4, mRNA
Length=5901
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 2821 TTGGTATCTGAGAAAGTCAGAAG 2799
> gi|1034676398|ref|XM_011531473.2| PREDICTED: Homo sapiens zinc
finger protein, Y-linked (ZFY), transcript variant X3, mRNA
Length=6224
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 3144 TTGGTATCTGAGAAAGTCAGAAG 3122
> gi|1034676400|ref|XM_011531475.2| PREDICTED: Homo sapiens zinc
finger protein, Y-linked (ZFY), transcript variant X5, mRNA
Length=6162
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 3082 TTGGTATCTGAGAAAGTCAGAAG 3060
> gi|1034676403|ref|XM_017030077.1| PREDICTED: Homo sapiens zinc
finger protein, Y-linked (ZFY), transcript variant X7, mRNA
Length=5752
Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 TTGGTATCCGAGAAAGTCAGAAG 23
|||||||| ||||||||||||||
Sbjct 2672 TTGGTATCTGAGAAAGTCAGAAG 2650
> gi|40807470|ref|NM_003594.3| Homo sapiens transcription termination
factor, RNA polymerase II (TTF2), mRNA
Length=4860
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1770 CGAGAAAGTCAGAAG 1784
> gi|1034562582|ref|XR_001737491.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X12,
misc_RNA
Length=3231
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1830 CGAGAAAGTCAGAAG 1844
> gi|1034562579|ref|XM_005271277.3| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X9,
mRNA
Length=9474
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1809 CGAGAAAGTCAGAAG 1823
> gi|1034562574|ref|XM_017002554.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X6,
mRNA
Length=9537
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1809 CGAGAAAGTCAGAAG 1823
> gi|1034562577|ref|XM_017002555.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X8,
mRNA
Length=8846
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1809 CGAGAAAGTCAGAAG 1823
> gi|1034562581|ref|XR_001737490.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X11,
misc_RNA
Length=9510
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1809 CGAGAAAGTCAGAAG 1823
> gi|1034562572|ref|XM_017002553.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X5,
mRNA
Length=9540
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1809 CGAGAAAGTCAGAAG 1823
> gi|1034562570|ref|XM_017002552.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X4,
mRNA
Length=9558
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1830 CGAGAAAGTCAGAAG 1844
> gi|1034562576|ref|XM_011542303.2| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X7,
mRNA
Length=9498
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1830 CGAGAAAGTCAGAAG 1844
> gi|1034562568|ref|XM_017002551.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X3,
mRNA
Length=8857
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1830 CGAGAAAGTCAGAAG 1844
> gi|1034562566|ref|XM_017002550.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X2,
mRNA
Length=8930
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1830 CGAGAAAGTCAGAAG 1844
> gi|1034562564|ref|XM_017002549.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X1,
mRNA
Length=9561
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1830 CGAGAAAGTCAGAAG 1844
> gi|1034562580|ref|XR_001737489.1| PREDICTED: Homo sapiens transcription
termination factor 2 (TTF2), transcript variant X10,
misc_RNA
Length=9594
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 CGAGAAAGTCAGAAG 23
|||||||||||||||
Sbjct 1830 CGAGAAAGTCAGAAG 1844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4090065595
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2