BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= TTCTCCGAACGTGTCACGT (evalue = 10)

Length=19
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|1034682278|ref|XR_914731.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034682281|ref|XR_914734.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034682280|ref|XR_001732248.1| PREDICTED: Homo sapiens uncha...  28.2    5.5  
  gi|1034682267|ref|XR_914725.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034682264|ref|XR_914720.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034682266|ref|XR_914724.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034682262|ref|XR_914719.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034682265|ref|XR_914723.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034676951|ref|XR_951879.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034592493|ref|XR_948836.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034583477|ref|XR_945568.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034583479|ref|XR_945571.2| PREDICTED: Homo sapiens uncharac...  28.2    5.5  
  gi|1034583480|ref|XR_001749413.1| PREDICTED: Homo sapiens uncha...  28.2    5.5  


> gi|1034682278|ref|XR_914731.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370086 (LOC105370086), transcript variant X1, 
ncRNA
Length=1215

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034682281|ref|XR_914734.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370086 (LOC105370086), transcript variant X4, 
ncRNA
Length=1189

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034682280|ref|XR_001732248.1| PREDICTED: Homo sapiens uncharacterized 
LOC105370086 (LOC105370086), transcript variant 
X3, ncRNA
Length=887

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034682267|ref|XR_914725.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370083 (LOC105370083), transcript variant X7, 
ncRNA
Length=1107

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034682264|ref|XR_914720.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370083 (LOC105370083), transcript variant X4, 
ncRNA
Length=1189

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034682266|ref|XR_914724.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370083 (LOC105370083), transcript variant X6, 
ncRNA
Length=1133

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034682262|ref|XR_914719.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370083 (LOC105370083), transcript variant X2, 
ncRNA
Length=1215

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034682265|ref|XR_914723.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370083 (LOC105370083), transcript variant X5, 
ncRNA
Length=2106

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034676951|ref|XR_951879.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370714 (LOC105370714), transcript variant X3, 
ncRNA
Length=2310

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  1     TTCTCCGAACGTGT  14
             ||||||||||||||
Sbjct  1873  TTCTCCGAACGTGT  1860


> gi|1034592493|ref|XR_948836.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370714 (LOC105370714), transcript variant X2, 
ncRNA
Length=2539

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  1     TTCTCCGAACGTGT  14
             ||||||||||||||
Sbjct  2102  TTCTCCGAACGTGT  2089


> gi|1034583477|ref|XR_945568.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370086 (LOC105370086), transcript variant X1, 
ncRNA
Length=1216

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034583479|ref|XR_945571.2| PREDICTED: Homo sapiens uncharacterized 
LOC105370086 (LOC105370086), transcript variant X4, 
ncRNA
Length=1190

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117


> gi|1034583480|ref|XR_001749413.1| PREDICTED: Homo sapiens uncharacterized 
LOC105370086 (LOC105370086), transcript variant 
X3, ncRNA
Length=888

 Score = 28.2 bits (14),  Expect = 5.5
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    CGAACGTGTCACGT  19
            ||||||||||||||
Sbjct  104  CGAACGTGTCACGT  117



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 1752885255


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2