BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TTCTCCGAACGTGTCACGT (evalue = 10)
Length=19
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034682278|ref|XR_914731.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034682281|ref|XR_914734.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034682280|ref|XR_001732248.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|1034682267|ref|XR_914725.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034682264|ref|XR_914720.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034682266|ref|XR_914724.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034682262|ref|XR_914719.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034682265|ref|XR_914723.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034676951|ref|XR_951879.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034592493|ref|XR_948836.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034583477|ref|XR_945568.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034583479|ref|XR_945571.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034583480|ref|XR_001749413.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
> gi|1034682278|ref|XR_914731.2| PREDICTED: Homo sapiens uncharacterized
LOC105370086 (LOC105370086), transcript variant X1,
ncRNA
Length=1215
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034682281|ref|XR_914734.2| PREDICTED: Homo sapiens uncharacterized
LOC105370086 (LOC105370086), transcript variant X4,
ncRNA
Length=1189
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034682280|ref|XR_001732248.1| PREDICTED: Homo sapiens uncharacterized
LOC105370086 (LOC105370086), transcript variant
X3, ncRNA
Length=887
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034682267|ref|XR_914725.2| PREDICTED: Homo sapiens uncharacterized
LOC105370083 (LOC105370083), transcript variant X7,
ncRNA
Length=1107
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034682264|ref|XR_914720.2| PREDICTED: Homo sapiens uncharacterized
LOC105370083 (LOC105370083), transcript variant X4,
ncRNA
Length=1189
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034682266|ref|XR_914724.2| PREDICTED: Homo sapiens uncharacterized
LOC105370083 (LOC105370083), transcript variant X6,
ncRNA
Length=1133
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034682262|ref|XR_914719.2| PREDICTED: Homo sapiens uncharacterized
LOC105370083 (LOC105370083), transcript variant X2,
ncRNA
Length=1215
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034682265|ref|XR_914723.2| PREDICTED: Homo sapiens uncharacterized
LOC105370083 (LOC105370083), transcript variant X5,
ncRNA
Length=2106
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034676951|ref|XR_951879.2| PREDICTED: Homo sapiens uncharacterized
LOC105370714 (LOC105370714), transcript variant X3,
ncRNA
Length=2310
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTCTCCGAACGTGT 14
||||||||||||||
Sbjct 1873 TTCTCCGAACGTGT 1860
> gi|1034592493|ref|XR_948836.2| PREDICTED: Homo sapiens uncharacterized
LOC105370714 (LOC105370714), transcript variant X2,
ncRNA
Length=2539
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TTCTCCGAACGTGT 14
||||||||||||||
Sbjct 2102 TTCTCCGAACGTGT 2089
> gi|1034583477|ref|XR_945568.2| PREDICTED: Homo sapiens uncharacterized
LOC105370086 (LOC105370086), transcript variant X1,
ncRNA
Length=1216
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034583479|ref|XR_945571.2| PREDICTED: Homo sapiens uncharacterized
LOC105370086 (LOC105370086), transcript variant X4,
ncRNA
Length=1190
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
> gi|1034583480|ref|XR_001749413.1| PREDICTED: Homo sapiens uncharacterized
LOC105370086 (LOC105370086), transcript variant
X3, ncRNA
Length=888
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CGAACGTGTCACGT 19
||||||||||||||
Sbjct 104 CGAACGTGTCACGT 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1752885255
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2