BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TTAGTGGCACTGGGGAAATC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034638142|ref|XM_005262696.4| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638148|ref|XM_017007658.1| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638141|ref|XM_006714068.3| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638150|ref|XM_005262698.4| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638147|ref|XM_011531543.2| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638140|ref|XM_005262695.4| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638145|ref|XM_017007657.1| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638139|ref|XM_005262693.4| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638143|ref|XM_006714069.3| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638138|ref|XM_006714066.3| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638144|ref|XM_006714070.3| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|374093211|ref|NM_001256428.1| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374093202|ref|NM_001256425.1| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374093200|ref|NM_001011513.3| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374093209|ref|NM_001256427.1| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374093207|ref|NM_001256426.1| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374092019|ref|NM_006457.4| Homo sapiens PDZ and LIM domain 5... 40.1 0.002
gi|1002913310|ref|NM_001320754.1| Homo sapiens steroid sulfatas... 32.2 0.47
gi|1002913046|ref|NM_001320753.1| Homo sapiens steroid sulfatas... 32.2 0.47
gi|1002909133|ref|NM_000351.5| Homo sapiens steroid sulfatase (... 32.2 0.47
gi|1002911521|ref|NM_001320752.1| Homo sapiens steroid sulfatas... 32.2 0.47
gi|1002911064|ref|NM_001320751.1| Homo sapiens steroid sulfatas... 32.2 0.47
gi|1002910387|ref|NM_001320750.1| Homo sapiens steroid sulfatas... 32.2 0.47
gi|1034679356|ref|XR_001735381.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|25777719|ref|NM_001080.3| Homo sapiens aldehyde dehydrogenas... 30.2 1.9
gi|25777720|ref|NM_170740.1| Homo sapiens aldehyde dehydrogenas... 30.2 1.9
gi|1034565627|ref|XR_001738448.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034681891|ref|XR_001732033.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034680812|ref|XR_959839.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034680813|ref|XR_959840.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034680814|ref|XR_959841.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034698726|ref|XR_001759607.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034698724|ref|XR_001759605.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034698725|ref|XR_001759606.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034694406|ref|XR_001757480.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|371121420|ref|NM_003491.3| Homo sapiens N(alpha)-acetyltrans... 28.2 7.3
gi|371121600|ref|NM_001256119.1| Homo sapiens N(alpha)-acetyltr... 28.2 7.3
gi|371121837|ref|NM_001256120.1| Homo sapiens N(alpha)-acetyltr... 28.2 7.3
gi|1034622676|ref|XM_017027621.1| PREDICTED: Homo sapiens ring ... 28.2 7.3
gi|1034622678|ref|XM_011529146.2| PREDICTED: Homo sapiens ring ... 28.2 7.3
gi|1034622673|ref|XM_011529145.2| PREDICTED: Homo sapiens ring ... 28.2 7.3
gi|1034622674|ref|XM_017027620.1| PREDICTED: Homo sapiens ring ... 28.2 7.3
gi|1012443731|ref|NM_007219.4| Homo sapiens ring finger protein... 28.2 7.3
gi|1012443733|ref|NM_001321749.1| Homo sapiens ring finger prot... 28.2 7.3
gi|1012443735|ref|NM_001134338.2| Homo sapiens ring finger prot... 28.2 7.3
gi|1012443732|ref|NM_001134337.2| Homo sapiens ring finger prot... 28.2 7.3
gi|1034584336|ref|XM_011521082.2| PREDICTED: Homo sapiens UBA d... 28.2 7.3
gi|221316644|ref|NM_001144072.1| Homo sapiens UBA domain contai... 28.2 7.3
gi|302699228|ref|NR_036531.1| Homo sapiens UBAC2 antisense RNA ... 28.2 7.3
gi|1034577316|ref|XR_001748442.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034571228|ref|XR_946285.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034571229|ref|XR_946286.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034571230|ref|XR_946287.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034672876|ref|XR_001746841.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034672874|ref|XR_001746839.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034672875|ref|XR_001746840.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|962611083|ref|NR_133931.1| Homo sapiens uncharacterized LOC1... 28.2 7.3
gi|1024846613|ref|NM_001324400.1| Homo sapiens solute carrier f... 28.2 7.3
gi|1034647180|ref|XR_001742534.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034639212|ref|XR_001741193.1| PREDICTED: Homo sapiens ELMO ... 28.2 7.3
gi|1034639211|ref|XM_011531818.2| PREDICTED: Homo sapiens ELMO ... 28.2 7.3
gi|1034559208|ref|XM_017001482.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559216|ref|XM_017001485.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559210|ref|XM_017001483.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559218|ref|XR_001737230.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559212|ref|XM_006710687.2| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559214|ref|XM_017001484.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559196|ref|XM_017001476.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559206|ref|XM_017001481.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|156564404|ref|NM_005026.3| Homo sapiens phosphatidylinositol... 28.2 7.3
gi|1034559202|ref|XM_017001479.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559213|ref|XM_006710689.2| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559204|ref|XM_017001480.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559200|ref|XM_017001478.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034559198|ref|XM_017001477.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
> gi|1034638142|ref|XM_005262696.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X5, mRNA
Length=6112
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1459 TTAGTGGCACTGGGGAAATC 1478
> gi|1034638148|ref|XM_017007658.1| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X10, mRNA
Length=5749
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1096 TTAGTGGCACTGGGGAAATC 1115
> gi|1034638141|ref|XM_006714068.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X4, mRNA
Length=6145
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1492 TTAGTGGCACTGGGGAAATC 1511
> gi|1034638150|ref|XM_005262698.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X11, mRNA
Length=5741
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1088 TTAGTGGCACTGGGGAAATC 1107
> gi|1034638147|ref|XM_011531543.2| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X9, mRNA
Length=6110
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1457 TTAGTGGCACTGGGGAAATC 1476
> gi|1034638140|ref|XM_005262695.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X3, mRNA
Length=6494
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1841 TTAGTGGCACTGGGGAAATC 1860
> gi|1034638145|ref|XM_017007657.1| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X8, mRNA
Length=6116
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1463 TTAGTGGCACTGGGGAAATC 1482
> gi|1034638139|ref|XM_005262693.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X2, mRNA
Length=6512
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1859 TTAGTGGCACTGGGGAAATC 1878
> gi|1034638143|ref|XM_006714069.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X6, mRNA
Length=6131
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1478 TTAGTGGCACTGGGGAAATC 1497
> gi|1034638138|ref|XM_006714066.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X1, mRNA
Length=6527
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1874 TTAGTGGCACTGGGGAAATC 1893
> gi|1034638144|ref|XM_006714070.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X7, mRNA
Length=6128
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1475 TTAGTGGCACTGGGGAAATC 1494
> gi|374093211|ref|NM_001256428.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 8, mRNA
Length=5980
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1323 TTAGTGGCACTGGGGAAATC 1342
> gi|374093202|ref|NM_001256425.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 3, mRNA
Length=5713
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1056 TTAGTGGCACTGGGGAAATC 1075
> gi|374093200|ref|NM_001011513.3| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 2, mRNA
Length=5805
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1148 TTAGTGGCACTGGGGAAATC 1167
> gi|374093209|ref|NM_001256427.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 7, mRNA
Length=3834
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1166 TTAGTGGCACTGGGGAAATC 1185
> gi|374093207|ref|NM_001256426.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 6, mRNA
Length=6219
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1562 TTAGTGGCACTGGGGAAATC 1581
> gi|374092019|ref|NM_006457.4| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 1, mRNA
Length=6132
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGGGAAATC 20
||||||||||||||||||||
Sbjct 1475 TTAGTGGCACTGGGGAAATC 1494
> gi|1002913310|ref|NM_001320754.1| Homo sapiens steroid sulfatase
(microsomal), isozyme S (STS), transcript variant 6, mRNA
Length=6386
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 AGTGGCACTGGGGAAA 18
||||||||||||||||
Sbjct 2054 AGTGGCACTGGGGAAA 2069
> gi|1002913046|ref|NM_001320753.1| Homo sapiens steroid sulfatase
(microsomal), isozyme S (STS), transcript variant 5, mRNA
Length=6238
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 AGTGGCACTGGGGAAA 18
||||||||||||||||
Sbjct 1906 AGTGGCACTGGGGAAA 1921
> gi|1002909133|ref|NM_000351.5| Homo sapiens steroid sulfatase
(microsomal), isozyme S (STS), transcript variant 1, mRNA
Length=6396
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 AGTGGCACTGGGGAAA 18
||||||||||||||||
Sbjct 2064 AGTGGCACTGGGGAAA 2079
> gi|1002911521|ref|NM_001320752.1| Homo sapiens steroid sulfatase
(microsomal), isozyme S (STS), transcript variant 4, mRNA
Length=6460
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 AGTGGCACTGGGGAAA 18
||||||||||||||||
Sbjct 2128 AGTGGCACTGGGGAAA 2143
> gi|1002911064|ref|NM_001320751.1| Homo sapiens steroid sulfatase
(microsomal), isozyme S (STS), transcript variant 3, mRNA
Length=6614
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 AGTGGCACTGGGGAAA 18
||||||||||||||||
Sbjct 2282 AGTGGCACTGGGGAAA 2297
> gi|1002910387|ref|NM_001320750.1| Homo sapiens steroid sulfatase
(microsomal), isozyme S (STS), transcript variant 2, mRNA
Length=6620
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 AGTGGCACTGGGGAAA 18
||||||||||||||||
Sbjct 2288 AGTGGCACTGGGGAAA 2303
> gi|1034679356|ref|XR_001735381.1| PREDICTED: Homo sapiens uncharacterized
LOC107985260 (LOC107985260), ncRNA
Length=1540
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 6 GGCACTGGGGAAATC 20
|||||||||||||||
Sbjct 1186 GGCACTGGGGAAATC 1172
> gi|25777719|ref|NM_001080.3| Homo sapiens aldehyde dehydrogenase
5 family member A1 (ALDH5A1), transcript variant 2, mRNA
Length=5131
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAAT 19
|||||||||||||||
Sbjct 656 TGGCACTGGGGAAAT 642
> gi|25777720|ref|NM_170740.1| Homo sapiens aldehyde dehydrogenase
5 family member A1 (ALDH5A1), transcript variant 1, mRNA
Length=5170
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAAT 19
|||||||||||||||
Sbjct 656 TGGCACTGGGGAAAT 642
> gi|1034565627|ref|XR_001738448.1| PREDICTED: Homo sapiens uncharacterized
LOC107985260 (LOC107985260), ncRNA
Length=1540
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 6 GGCACTGGGGAAATC 20
|||||||||||||||
Sbjct 1186 GGCACTGGGGAAATC 1172
> gi|1034681891|ref|XR_001732033.1| PREDICTED: Homo sapiens uncharacterized
LOC107984409 (LOC107984409), ncRNA
Length=3945
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 2 TAGTGGCACTGGGGAAAT 19
||||||||| ||||||||
Sbjct 408 TAGTGGCACGGGGGAAAT 391
> gi|1034680812|ref|XR_959839.2| PREDICTED: Homo sapiens uncharacterized
LOC105378465 (LOC105378465), transcript variant X1,
ncRNA
Length=1161
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 AGTGGCACTGGGGA 16
||||||||||||||
Sbjct 113 AGTGGCACTGGGGA 100
> gi|1034680813|ref|XR_959840.2| PREDICTED: Homo sapiens uncharacterized
LOC105378465 (LOC105378465), transcript variant X2,
ncRNA
Length=1434
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 AGTGGCACTGGGGA 16
||||||||||||||
Sbjct 386 AGTGGCACTGGGGA 373
> gi|1034680814|ref|XR_959841.2| PREDICTED: Homo sapiens uncharacterized
LOC105378465 (LOC105378465), transcript variant X3,
ncRNA
Length=2049
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 AGTGGCACTGGGGA 16
||||||||||||||
Sbjct 113 AGTGGCACTGGGGA 100
> gi|1034698726|ref|XR_001759607.1| PREDICTED: Homo sapiens uncharacterized
LOC107987097 (LOC107987097), transcript variant
X3, ncRNA
Length=5912
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 1263 GTGGCACTGGGGAA 1276
> gi|1034698724|ref|XR_001759605.1| PREDICTED: Homo sapiens uncharacterized
LOC107987097 (LOC107987097), transcript variant
X1, ncRNA
Length=7103
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 2454 GTGGCACTGGGGAA 2467
> gi|1034698725|ref|XR_001759606.1| PREDICTED: Homo sapiens uncharacterized
LOC107987097 (LOC107987097), transcript variant
X2, ncRNA
Length=6531
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 1882 GTGGCACTGGGGAA 1895
> gi|1034694406|ref|XR_001757480.1| PREDICTED: Homo sapiens uncharacterized
LOC107983980 (LOC107983980), ncRNA
Length=2089
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 678 TGGCACTGGGGAAA 665
> gi|371121420|ref|NM_003491.3| Homo sapiens N(alpha)-acetyltransferase
10, NatA catalytic subunit (NAA10), transcript variant
1, mRNA
Length=1136
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 1011 GTGGCACTGGGGAA 1024
> gi|371121600|ref|NM_001256119.1| Homo sapiens N(alpha)-acetyltransferase
10, NatA catalytic subunit (NAA10), transcript variant
2, mRNA
Length=1091
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 966 GTGGCACTGGGGAA 979
> gi|371121837|ref|NM_001256120.1| Homo sapiens N(alpha)-acetyltransferase
10, NatA catalytic subunit (NAA10), transcript variant
3, mRNA
Length=1118
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 993 GTGGCACTGGGGAA 1006
> gi|1034622676|ref|XM_017027621.1| PREDICTED: Homo sapiens ring
finger protein 24 (RNF24), transcript variant X3, mRNA
Length=4620
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3973 TGGCACTGGGGAAA 3960
> gi|1034622678|ref|XM_011529146.2| PREDICTED: Homo sapiens ring
finger protein 24 (RNF24), transcript variant X4, mRNA
Length=4759
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 4112 TGGCACTGGGGAAA 4099
> gi|1034622673|ref|XM_011529145.2| PREDICTED: Homo sapiens ring
finger protein 24 (RNF24), transcript variant X1, mRNA
Length=4829
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 4182 TGGCACTGGGGAAA 4169
> gi|1034622674|ref|XM_017027620.1| PREDICTED: Homo sapiens ring
finger protein 24 (RNF24), transcript variant X2, mRNA
Length=4851
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 4204 TGGCACTGGGGAAA 4191
> gi|1012443731|ref|NM_007219.4| Homo sapiens ring finger protein
24 (RNF24), transcript variant 1, mRNA
Length=7666
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 4159 TGGCACTGGGGAAA 4146
> gi|1012443733|ref|NM_001321749.1| Homo sapiens ring finger protein
24 (RNF24), transcript variant 4, mRNA
Length=7610
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 4103 TGGCACTGGGGAAA 4090
> gi|1012443735|ref|NM_001134338.2| Homo sapiens ring finger protein
24 (RNF24), transcript variant 3, mRNA
Length=7443
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3936 TGGCACTGGGGAAA 3923
> gi|1012443732|ref|NM_001134337.2| Homo sapiens ring finger protein
24 (RNF24), transcript variant 2, mRNA
Length=7374
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3867 TGGCACTGGGGAAA 3854
> gi|1034584336|ref|XM_011521082.2| PREDICTED: Homo sapiens UBA
domain containing 2 (UBAC2), transcript variant X1, mRNA
Length=2383
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 203 GTGGCACTGGGGAA 190
> gi|221316644|ref|NM_001144072.1| Homo sapiens UBA domain containing
2 (UBAC2), transcript variant 1, mRNA
Length=2696
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 203 GTGGCACTGGGGAA 190
> gi|302699228|ref|NR_036531.1| Homo sapiens UBAC2 antisense RNA
1 (UBAC2-AS1), transcript variant 1, long non-coding RNA
Length=1821
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 131 GTGGCACTGGGGAA 144
> gi|1034577316|ref|XR_001748442.1| PREDICTED: Homo sapiens uncharacterized
LOC107984409 (LOC107984409), ncRNA
Length=3945
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 2 TAGTGGCACTGGGGAAAT 19
||||||||| ||||||||
Sbjct 408 TAGTGGCACGGGGGAAAT 391
> gi|1034571228|ref|XR_946285.2| PREDICTED: Homo sapiens uncharacterized
LOC105378465 (LOC105378465), transcript variant X1,
ncRNA
Length=1161
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 AGTGGCACTGGGGA 16
||||||||||||||
Sbjct 113 AGTGGCACTGGGGA 100
> gi|1034571229|ref|XR_946286.2| PREDICTED: Homo sapiens uncharacterized
LOC105378465 (LOC105378465), transcript variant X2,
ncRNA
Length=1434
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 AGTGGCACTGGGGA 16
||||||||||||||
Sbjct 386 AGTGGCACTGGGGA 373
> gi|1034571230|ref|XR_946287.2| PREDICTED: Homo sapiens uncharacterized
LOC105378465 (LOC105378465), transcript variant X3,
ncRNA
Length=2049
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 AGTGGCACTGGGGA 16
||||||||||||||
Sbjct 113 AGTGGCACTGGGGA 100
> gi|1034672876|ref|XR_001746841.1| PREDICTED: Homo sapiens uncharacterized
LOC107987097 (LOC107987097), transcript variant
X3, ncRNA
Length=5915
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 1263 GTGGCACTGGGGAA 1276
> gi|1034672874|ref|XR_001746839.1| PREDICTED: Homo sapiens uncharacterized
LOC107987097 (LOC107987097), transcript variant
X1, ncRNA
Length=7106
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 2454 GTGGCACTGGGGAA 2467
> gi|1034672875|ref|XR_001746840.1| PREDICTED: Homo sapiens uncharacterized
LOC107987097 (LOC107987097), transcript variant
X2, ncRNA
Length=6534
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GTGGCACTGGGGAA 17
||||||||||||||
Sbjct 1882 GTGGCACTGGGGAA 1895
> gi|962611083|ref|NR_133931.1| Homo sapiens uncharacterized LOC105375512
(LOC105375512), long non-coding RNA
Length=457
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 AGTGGCACTGGGGA 16
||||||||||||||
Sbjct 129 AGTGGCACTGGGGA 116
> gi|1024846613|ref|NM_001324400.1| Homo sapiens solute carrier
family 13 member 1 (SLC13A1), transcript variant 2, mRNA
Length=4312
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGCACTGGGGAAAT 19
||||||||||||||
Sbjct 956 GGCACTGGGGAAAT 943
> gi|1034647180|ref|XR_001742534.1| PREDICTED: Homo sapiens uncharacterized
LOC107983980 (LOC107983980), ncRNA
Length=2089
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 678 TGGCACTGGGGAAA 665
> gi|1034639212|ref|XR_001741193.1| PREDICTED: Homo sapiens ELMO
domain containing 2 (ELMOD2), transcript variant X3, misc_RNA
Length=6719
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGG 14
||||||||||||||
Sbjct 2418 TTAGTGGCACTGGG 2431
> gi|1034639211|ref|XM_011531818.2| PREDICTED: Homo sapiens ELMO
domain containing 2 (ELMOD2), transcript variant X2, mRNA
Length=6757
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TTAGTGGCACTGGG 14
||||||||||||||
Sbjct 2418 TTAGTGGCACTGGG 2431
> gi|1034559208|ref|XM_017001482.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X7, mRNA
Length=5303
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3299 TGGCACTGGGGAAA 3312
> gi|1034559216|ref|XM_017001485.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X12, mRNA
Length=5029
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3025 TGGCACTGGGGAAA 3038
> gi|1034559210|ref|XM_017001483.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X8, mRNA
Length=5206
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3202 TGGCACTGGGGAAA 3215
> gi|1034559218|ref|XR_001737230.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X13, misc_RNA
Length=4997
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 2988 TGGCACTGGGGAAA 3001
> gi|1034559212|ref|XM_006710687.2| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X9, mRNA
Length=5272
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3273 TGGCACTGGGGAAA 3286
> gi|1034559214|ref|XM_017001484.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X11, mRNA
Length=5320
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3316 TGGCACTGGGGAAA 3329
> gi|1034559196|ref|XM_017001476.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X1, mRNA
Length=5500
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3496 TGGCACTGGGGAAA 3509
> gi|1034559206|ref|XM_017001481.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X6, mRNA
Length=5381
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3377 TGGCACTGGGGAAA 3390
> gi|156564404|ref|NM_005026.3| Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit delta (PIK3CD),
mRNA
Length=5411
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3213 TGGCACTGGGGAAA 3226
> gi|1034559202|ref|XM_017001479.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X4, mRNA
Length=5466
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3462 TGGCACTGGGGAAA 3475
> gi|1034559213|ref|XM_006710689.2| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X10, mRNA
Length=5125
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3127 TGGCACTGGGGAAA 3140
> gi|1034559204|ref|XM_017001480.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X5, mRNA
Length=5308
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3304 TGGCACTGGGGAAA 3317
> gi|1034559200|ref|XM_017001478.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X3, mRNA
Length=5597
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3593 TGGCACTGGGGAAA 3606
> gi|1034559198|ref|XM_017001477.1| PREDICTED: Homo sapiens phosphatidylinositol-4,5-bisphosphate
3-kinase catalytic subunit
delta (PIK3CD), transcript variant X2, mRNA
Length=5437
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 TGGCACTGGGGAAA 18
||||||||||||||
Sbjct 3433 TGGCACTGGGGAAA 3446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2