BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TGGGTAGGGTAAATCAGTAAGAGG (evalue = 10)
Length=24
Score E
Sequences producing significant alignments: (Bits) Value
gi|578805675|ref|XM_006712984.1| PREDICTED: Homo sapiens cateni... 48.1 2e-05
gi|578805673|ref|XM_006712983.1| PREDICTED: Homo sapiens cateni... 48.1 2e-05
gi|1034631301|ref|XM_017005738.1| PREDICTED: Homo sapiens caten... 48.1 2e-05
gi|578805672|ref|XM_005264886.2| PREDICTED: Homo sapiens cateni... 48.1 2e-05
gi|578805677|ref|XM_006712985.1| PREDICTED: Homo sapiens cateni... 48.1 2e-05
gi|148227671|ref|NM_001098210.1| Homo sapiens catenin beta 1 (C... 48.1 2e-05
gi|148233337|ref|NM_001098209.1| Homo sapiens catenin beta 1 (C... 48.1 2e-05
gi|148228165|ref|NM_001904.3| Homo sapiens catenin beta 1 (CTNN... 48.1 2e-05
gi|1034601808|ref|XM_006722149.3| PREDICTED: Homo sapiens sling... 32.2 0.94
gi|1034665323|ref|XM_011518708.2| PREDICTED: Homo sapiens muscl... 30.2 3.7
gi|1034665320|ref|XM_005251996.3| PREDICTED: Homo sapiens muscl... 30.2 3.7
gi|1034665319|ref|XM_005251995.3| PREDICTED: Homo sapiens muscl... 30.2 3.7
gi|1034665321|ref|XM_017014734.1| PREDICTED: Homo sapiens muscl... 30.2 3.7
gi|1034665318|ref|XM_005251994.3| PREDICTED: Homo sapiens muscl... 30.2 3.7
gi|460838706|ref|NR_024052.2| Homo sapiens HLA complex group 18... 30.2 3.7
gi|460838708|ref|NR_102326.1| Homo sapiens HLA complex group 18... 30.2 3.7
gi|460838707|ref|NR_024053.2| Homo sapiens HLA complex group 18... 30.2 3.7
gi|109659840|ref|NM_152277.2| Homo sapiens ubiquitin domain con... 30.2 3.7
gi|1034646684|ref|XM_017010023.1| PREDICTED: Homo sapiens ubiqu... 30.2 3.7
gi|1034646682|ref|XM_017010022.1| PREDICTED: Homo sapiens ubiqu... 30.2 3.7
gi|1034618079|ref|XM_017005401.1| PREDICTED: Homo sapiens ring ... 30.2 3.7
> gi|578805675|ref|XM_006712984.1| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X4, mRNA
Length=3324
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 TGGGTAGGGTAAATCAGTAAGAGG 24
||||||||||||||||||||||||
Sbjct 3163 TGGGTAGGGTAAATCAGTAAGAGG 3186
> gi|578805673|ref|XM_006712983.1| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X3, mRNA
Length=3629
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 TGGGTAGGGTAAATCAGTAAGAGG 24
||||||||||||||||||||||||
Sbjct 3468 TGGGTAGGGTAAATCAGTAAGAGG 3491
> gi|1034631301|ref|XM_017005738.1| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X2, mRNA
Length=3267
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 TGGGTAGGGTAAATCAGTAAGAGG 24
||||||||||||||||||||||||
Sbjct 3106 TGGGTAGGGTAAATCAGTAAGAGG 3129
> gi|578805672|ref|XM_005264886.2| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X1, mRNA
Length=3731
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 TGGGTAGGGTAAATCAGTAAGAGG 24
||||||||||||||||||||||||
Sbjct 3570 TGGGTAGGGTAAATCAGTAAGAGG 3593
> gi|578805677|ref|XM_006712985.1| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X5, mRNA
Length=3104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 TGGGTAGGGTAAATCAGTAAGAGG 24
||||||||||||||||||||||||
Sbjct 2943 TGGGTAGGGTAAATCAGTAAGAGG 2966
> gi|148227671|ref|NM_001098210.1| Homo sapiens catenin beta 1
(CTNNB1), transcript variant 3, mRNA
Length=3256
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 TGGGTAGGGTAAATCAGTAAGAGG 24
||||||||||||||||||||||||
Sbjct 3092 TGGGTAGGGTAAATCAGTAAGAGG 3115
> gi|148233337|ref|NM_001098209.1| Homo sapiens catenin beta 1
(CTNNB1), transcript variant 2, mRNA
Length=3415
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 TGGGTAGGGTAAATCAGTAAGAGG 24
||||||||||||||||||||||||
Sbjct 3251 TGGGTAGGGTAAATCAGTAAGAGG 3274
> gi|148228165|ref|NM_001904.3| Homo sapiens catenin beta 1 (CTNNB1),
transcript variant 1, mRNA
Length=3720
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 TGGGTAGGGTAAATCAGTAAGAGG 24
||||||||||||||||||||||||
Sbjct 3556 TGGGTAGGGTAAATCAGTAAGAGG 3579
> gi|1034601808|ref|XM_006722149.3| PREDICTED: Homo sapiens slingshot
protein phosphatase 2 (SSH2), transcript variant X6,
mRNA
Length=12982
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 5 TAGGGTAAATCAGTAA 20
||||||||||||||||
Sbjct 2011 TAGGGTAAATCAGTAA 2026
> gi|1034665323|ref|XM_011518708.2| PREDICTED: Homo sapiens muscle
associated receptor tyrosine kinase (MUSK), transcript variant
X5, mRNA
Length=7134
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 GGTAAATCAGTAAGA 22
|||||||||||||||
Sbjct 2248 GGTAAATCAGTAAGA 2234
> gi|1034665320|ref|XM_005251996.3| PREDICTED: Homo sapiens muscle
associated receptor tyrosine kinase (MUSK), transcript variant
X3, mRNA
Length=8945
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 GGTAAATCAGTAAGA 22
|||||||||||||||
Sbjct 4059 GGTAAATCAGTAAGA 4045
> gi|1034665319|ref|XM_005251995.3| PREDICTED: Homo sapiens muscle
associated receptor tyrosine kinase (MUSK), transcript variant
X2, mRNA
Length=8976
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 GGTAAATCAGTAAGA 22
|||||||||||||||
Sbjct 4090 GGTAAATCAGTAAGA 4076
> gi|1034665321|ref|XM_017014734.1| PREDICTED: Homo sapiens muscle
associated receptor tyrosine kinase (MUSK), transcript variant
X4, mRNA
Length=8737
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 GGTAAATCAGTAAGA 22
|||||||||||||||
Sbjct 3851 GGTAAATCAGTAAGA 3837
> gi|1034665318|ref|XM_005251994.3| PREDICTED: Homo sapiens muscle
associated receptor tyrosine kinase (MUSK), transcript variant
X1, mRNA
Length=9001
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 GGTAAATCAGTAAGA 22
|||||||||||||||
Sbjct 4115 GGTAAATCAGTAAGA 4101
> gi|460838706|ref|NR_024052.2| Homo sapiens HLA complex group
18 (non-protein coding) (HCG18), transcript variant 1, long
non-coding RNA
Length=6820
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TAAATCAGTAAGAGG 24
|||||||||||||||
Sbjct 4311 TAAATCAGTAAGAGG 4325
> gi|460838708|ref|NR_102326.1| Homo sapiens HLA complex group
18 (non-protein coding) (HCG18), transcript variant 3, long
non-coding RNA
Length=8477
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TAAATCAGTAAGAGG 24
|||||||||||||||
Sbjct 5968 TAAATCAGTAAGAGG 5982
> gi|460838707|ref|NR_024053.2| Homo sapiens HLA complex group
18 (non-protein coding) (HCG18), transcript variant 2, long
non-coding RNA
Length=6606
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TAAATCAGTAAGAGG 24
|||||||||||||||
Sbjct 4097 TAAATCAGTAAGAGG 4111
> gi|109659840|ref|NM_152277.2| Homo sapiens ubiquitin domain containing
2 (UBTD2), mRNA
Length=3015
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 5 TAGGGTAAATCAGTA 19
|||||||||||||||
Sbjct 2612 TAGGGTAAATCAGTA 2626
> gi|1034646684|ref|XM_017010023.1| PREDICTED: Homo sapiens ubiquitin
domain containing 2 (UBTD2), transcript variant X2, mRNA
Length=2950
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 5 TAGGGTAAATCAGTA 19
|||||||||||||||
Sbjct 2546 TAGGGTAAATCAGTA 2560
> gi|1034646682|ref|XM_017010022.1| PREDICTED: Homo sapiens ubiquitin
domain containing 2 (UBTD2), transcript variant X1, mRNA
Length=3026
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 5 TAGGGTAAATCAGTA 19
|||||||||||||||
Sbjct 2622 TAGGGTAAATCAGTA 2636
> gi|1034618079|ref|XM_017005401.1| PREDICTED: Homo sapiens ring
finger protein 144A (RNF144A), transcript variant X8, mRNA
Length=14128
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 6 AGGGTAAATCAGTAAGAGG 24
|||||||||||| ||||||
Sbjct 3762 AGGGTAAATCAGGAAGAGG 3744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4674360680
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2