BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= TGGACTCCACGACGTACTCA (evalue = 10)

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|576583514|ref|NM_001256799.2| Homo sapiens glyceraldehyde-3-...  40.1    0.002
  gi|576583523|ref|NM_001289746.1| Homo sapiens glyceraldehyde-3-...  40.1    0.002
  gi|576583510|ref|NM_002046.5| Homo sapiens glyceraldehyde-3-pho...  40.1    0.002
  gi|576583518|ref|NM_001289745.1| Homo sapiens glyceraldehyde-3-...  40.1    0.002


> gi|576583514|ref|NM_001256799.2| Homo sapiens glyceraldehyde-3-phosphate 
dehydrogenase (GAPDH), transcript variant 2, mRNA
Length=1455

 Score = 40.1 bits (20),  Expect = 0.002
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TGGACTCCACGACGTACTCA  20
            ||||||||||||||||||||
Sbjct  517  TGGACTCCACGACGTACTCA  498


> gi|576583523|ref|NM_001289746.1| Homo sapiens glyceraldehyde-3-phosphate 
dehydrogenase (GAPDH), transcript variant 4, mRNA
Length=1407

 Score = 40.1 bits (20),  Expect = 0.002
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TGGACTCCACGACGTACTCA  20
            ||||||||||||||||||||
Sbjct  469  TGGACTCCACGACGTACTCA  450


> gi|576583510|ref|NM_002046.5| Homo sapiens glyceraldehyde-3-phosphate 
dehydrogenase (GAPDH), transcript variant 1, mRNA
Length=1421

 Score = 40.1 bits (20),  Expect = 0.002
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TGGACTCCACGACGTACTCA  20
            ||||||||||||||||||||
Sbjct  483  TGGACTCCACGACGTACTCA  464


> gi|576583518|ref|NM_001289745.1| Homo sapiens glyceraldehyde-3-phosphate 
dehydrogenase (GAPDH), transcript variant 3, mRNA
Length=1513

 Score = 40.1 bits (20),  Expect = 0.002
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TGGACTCCACGACGTACTCA  20
            ||||||||||||||||||||
Sbjct  575  TGGACTCCACGACGTACTCA  556



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 2337180340


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2