BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TGCTTACGCCCAGATTTTCT (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|296010844|ref|NM_001673.4| Homo sapiens asparagine synthetas... 40.1 0.002
gi|296010847|ref|NM_001178075.1| Homo sapiens asparagine synthe... 40.1 0.002
gi|296010849|ref|NM_001178076.1| Homo sapiens asparagine synthe... 30.2 1.9
gi|1034672079|ref|XM_017015364.1| PREDICTED: Homo sapiens SEC16... 28.2 7.3
gi|1034672078|ref|XM_011519264.2| PREDICTED: Homo sapiens SEC16... 28.2 7.3
gi|1034672077|ref|XR_929881.2| PREDICTED: Homo sapiens SEC16 ho... 28.2 7.3
gi|1034672070|ref|XM_011519250.2| PREDICTED: Homo sapiens SEC16... 28.2 7.3
gi|1034672071|ref|XM_011519252.2| PREDICTED: Homo sapiens SEC16... 28.2 7.3
gi|1034672074|ref|XM_011519255.2| PREDICTED: Homo sapiens SEC16... 28.2 7.3
gi|1034672076|ref|XM_011519263.2| PREDICTED: Homo sapiens SEC16... 28.2 7.3
gi|767958851|ref|XM_005266134.2| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|767958862|ref|XM_011519251.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|767958868|ref|XM_011519254.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|767958872|ref|XM_011519256.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|767958858|ref|XM_011519249.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|767958866|ref|XM_011519253.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|1034672072|ref|XM_017015363.1| PREDICTED: Homo sapiens SEC16... 28.2 7.3
gi|767958874|ref|XM_011519257.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|767958878|ref|XM_011519259.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|767958876|ref|XM_011519258.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|767958882|ref|XM_011519261.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|767958884|ref|XM_011519262.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|124378038|ref|NM_014866.1| Homo sapiens SEC16 homolog A, end... 28.2 7.3
gi|1034672068|ref|XM_011519246.2| PREDICTED: Homo sapiens SEC16... 28.2 7.3
gi|767958854|ref|XM_011519247.1| PREDICTED: Homo sapiens SEC16 ... 28.2 7.3
gi|449083350|ref|NM_001276418.1| Homo sapiens SEC16 homolog A, ... 28.2 7.3
gi|1034672069|ref|XM_011519248.2| PREDICTED: Homo sapiens SEC16... 28.2 7.3
gi|1034672075|ref|XM_011519260.2| PREDICTED: Homo sapiens SEC16... 28.2 7.3
> gi|296010844|ref|NM_001673.4| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 2, mRNA
Length=2084
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGATTTTCT 20
||||||||||||||||||||
Sbjct 180 TGCTTACGCCCAGATTTTCT 199
> gi|296010847|ref|NM_001178075.1| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 4,
mRNA
Length=2010
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGATTTTCT 20
||||||||||||||||||||
Sbjct 180 TGCTTACGCCCAGATTTTCT 199
> gi|296010849|ref|NM_001178076.1| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 5,
mRNA
Length=1776
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGAT 15
|||||||||||||||
Sbjct 180 TGCTTACGCCCAGAT 194
> gi|1034672079|ref|XM_017015364.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X23, mRNA
Length=4982
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|1034672078|ref|XM_011519264.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X22, mRNA
Length=6091
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|1034672077|ref|XR_929881.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X21, misc_RNA
Length=6629
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|1034672070|ref|XM_011519250.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X6, mRNA
Length=7649
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|1034672071|ref|XM_011519252.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X8, mRNA
Length=8896
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|1034672074|ref|XM_011519255.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X12, mRNA
Length=8836
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|1034672076|ref|XM_011519263.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X20, mRNA
Length=8125
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3082 TGCTTACGCCCAGA 3095
> gi|767958851|ref|XM_005266134.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X1, mRNA
Length=8971
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958862|ref|XM_011519251.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X7, mRNA
Length=8911
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958868|ref|XM_011519254.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X10, mRNA
Length=8896
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958872|ref|XM_011519256.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X13, mRNA
Length=8836
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958858|ref|XM_011519249.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X5, mRNA
Length=8962
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958866|ref|XM_011519253.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X9, mRNA
Length=8902
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|1034672072|ref|XM_017015363.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X11, mRNA
Length=8887
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958874|ref|XM_011519257.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X14, mRNA
Length=8830
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958878|ref|XM_011519259.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X16, mRNA
Length=8770
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958876|ref|XM_011519258.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X15, mRNA
Length=8830
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958882|ref|XM_011519261.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X18, mRNA
Length=8524
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3793 TGCTTACGCCCAGA 3806
> gi|767958884|ref|XM_011519262.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X19, mRNA
Length=8260
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3082 TGCTTACGCCCAGA 3095
> gi|124378038|ref|NM_014866.1| Homo sapiens SEC16 homolog A, endoplasmic
reticulum export factor (SEC16A), transcript variant
1, mRNA
Length=9059
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3930 TGCTTACGCCCAGA 3943
> gi|1034672068|ref|XM_011519246.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X2, mRNA
Length=9117
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3939 TGCTTACGCCCAGA 3952
> gi|767958854|ref|XM_011519247.1| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A), transcript
variant X3, mRNA
Length=8974
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3796 TGCTTACGCCCAGA 3809
> gi|449083350|ref|NM_001276418.1| Homo sapiens SEC16 homolog A,
endoplasmic reticulum export factor (SEC16A), transcript variant
2, mRNA
Length=9000
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3940 TGCTTACGCCCAGA 3953
> gi|1034672069|ref|XM_011519248.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X4, mRNA
Length=8948
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3770 TGCTTACGCCCAGA 3783
> gi|1034672075|ref|XM_011519260.2| PREDICTED: Homo sapiens SEC16
homolog A, endoplasmic reticulum export factor (SEC16A),
transcript variant X17, mRNA
Length=8955
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TGCTTACGCCCAGA 14
||||||||||||||
Sbjct 3777 TGCTTACGCCCAGA 3790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2