BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TGCTCTTGCTCACTCACACTCC (evalue = 10)
Length=22
Score E
Sequences producing significant alignments: (Bits) Value
gi|532164759|ref|NR_026800.2| Homo sapiens KIAA0125 (KIAA0125),... 44.1 2e-04
gi|767888546|ref|XR_956928.1| PREDICTED: Homo sapiens uncharact... 30.2 2.8
gi|1034695633|ref|XR_954537.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034695632|ref|XR_954538.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034695631|ref|XR_954536.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034695629|ref|XR_001758136.1| PREDICTED: Homo sapiens uncha... 30.2 2.8
gi|1034695630|ref|XR_954534.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034695628|ref|XR_954533.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034695627|ref|XR_954532.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034695626|ref|XR_001758135.1| PREDICTED: Homo sapiens uncha... 30.2 2.8
gi|334724441|ref|NM_014293.3| Homo sapiens neuronal pentraxin r... 30.2 2.8
gi|767952121|ref|XR_928877.1| PREDICTED: Homo sapiens uncharact... 30.2 2.8
gi|1034653140|ref|XR_926781.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034653139|ref|XR_926782.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034653138|ref|XR_926780.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034653136|ref|XR_001744114.1| PREDICTED: Homo sapiens uncha... 30.2 2.8
gi|1034653137|ref|XR_926778.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034653135|ref|XR_926777.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034653134|ref|XR_926776.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|1034653133|ref|XR_001744113.1| PREDICTED: Homo sapiens uncha... 30.2 2.8
> gi|532164759|ref|NR_026800.2| Homo sapiens KIAA0125 (KIAA0125),
long non-coding RNA
Length=9643
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 TGCTCTTGCTCACTCACACTCC 22
||||||||||||||||||||||
Sbjct 6902 TGCTCTTGCTCACTCACACTCC 6881
> gi|767888546|ref|XR_956928.1| PREDICTED: Homo sapiens uncharacterized
LOC105375836 (LOC105375836), ncRNA
Length=724
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 209 CTCTTGCTCACTCAC 195
> gi|1034695633|ref|XR_954537.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X8,
ncRNA
Length=959
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 328 CTCTTGCTCACTCAC 342
> gi|1034695632|ref|XR_954538.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X7,
ncRNA
Length=1001
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 370 CTCTTGCTCACTCAC 384
> gi|1034695631|ref|XR_954536.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X6,
ncRNA
Length=1134
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 503 CTCTTGCTCACTCAC 517
> gi|1034695629|ref|XR_001758136.1| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant
X4, ncRNA
Length=2566
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 1935 CTCTTGCTCACTCAC 1949
> gi|1034695630|ref|XR_954534.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X5,
ncRNA
Length=1838
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 1207 CTCTTGCTCACTCAC 1221
> gi|1034695628|ref|XR_954533.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X3,
ncRNA
Length=1971
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 1340 CTCTTGCTCACTCAC 1354
> gi|1034695627|ref|XR_954532.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X2,
ncRNA
Length=2421
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 1790 CTCTTGCTCACTCAC 1804
> gi|1034695626|ref|XR_001758135.1| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant
X1, ncRNA
Length=3403
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 2772 CTCTTGCTCACTCAC 2786
> gi|334724441|ref|NM_014293.3| Homo sapiens neuronal pentraxin
receptor (NPTXR), mRNA
Length=5831
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 TGCTCACTCACACTC 21
|||||||||||||||
Sbjct 5584 TGCTCACTCACACTC 5570
> gi|767952121|ref|XR_928877.1| PREDICTED: Homo sapiens uncharacterized
LOC105375836 (LOC105375836), ncRNA
Length=724
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 209 CTCTTGCTCACTCAC 195
> gi|1034653140|ref|XR_926781.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X8,
ncRNA
Length=959
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 328 CTCTTGCTCACTCAC 342
> gi|1034653139|ref|XR_926782.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X7,
ncRNA
Length=1001
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 370 CTCTTGCTCACTCAC 384
> gi|1034653138|ref|XR_926780.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X6,
ncRNA
Length=1134
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 503 CTCTTGCTCACTCAC 517
> gi|1034653136|ref|XR_001744114.1| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant
X4, ncRNA
Length=2566
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 1935 CTCTTGCTCACTCAC 1949
> gi|1034653137|ref|XR_926778.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X5,
ncRNA
Length=1838
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 1207 CTCTTGCTCACTCAC 1221
> gi|1034653135|ref|XR_926777.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X3,
ncRNA
Length=1971
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 1340 CTCTTGCTCACTCAC 1354
> gi|1034653134|ref|XR_926776.2| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant X2,
ncRNA
Length=2421
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 1790 CTCTTGCTCACTCAC 1804
> gi|1034653133|ref|XR_001744113.1| PREDICTED: Homo sapiens uncharacterized
LOC105375049 (LOC105375049), transcript variant
X1, ncRNA
Length=3403
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTCTTGCTCACTCAC 17
|||||||||||||||
Sbjct 2772 CTCTTGCTCACTCAC 2786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 3505770510
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2