BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TGACGTGCAACTCAAAGACC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|71772358|ref|NM_001019.4| Homo sapiens ribosomal protein S15... 40.1 0.002
gi|71772414|ref|NM_001030009.1| Homo sapiens ribosomal protein ... 40.1 0.002
gi|530404119|ref|XM_005267826.1| PREDICTED: Homo sapiens protei... 28.2 7.3
gi|767980917|ref|XM_011536918.1| PREDICTED: Homo sapiens protei... 28.2 7.3
gi|1034587451|ref|XM_011536916.2| PREDICTED: Homo sapiens prote... 28.2 7.3
gi|1034587450|ref|XM_011536921.2| PREDICTED: Homo sapiens prote... 28.2 7.3
gi|1034587449|ref|XM_011536914.2| PREDICTED: Homo sapiens prote... 28.2 7.3
gi|1034587458|ref|XM_017021424.1| PREDICTED: Homo sapiens prote... 28.2 7.3
gi|767980921|ref|XM_011536920.1| PREDICTED: Homo sapiens protei... 28.2 7.3
gi|1034587454|ref|XM_017021422.1| PREDICTED: Homo sapiens prote... 28.2 7.3
gi|1034587453|ref|XM_011536919.2| PREDICTED: Homo sapiens prote... 28.2 7.3
gi|240849346|ref|NM_178587.2| Homo sapiens protein phosphatase ... 28.2 7.3
gi|1034587456|ref|XM_017021423.1| PREDICTED: Homo sapiens prote... 28.2 7.3
gi|240849340|ref|NM_178586.2| Homo sapiens protein phosphatase ... 28.2 7.3
gi|240849335|ref|NM_002719.3| Homo sapiens protein phosphatase ... 28.2 7.3
gi|1034587452|ref|XM_011536915.2| PREDICTED: Homo sapiens prote... 28.2 7.3
gi|530404107|ref|XM_005267820.1| PREDICTED: Homo sapiens protei... 28.2 7.3
gi|240849352|ref|NM_001161725.1| Homo sapiens protein phosphata... 28.2 7.3
gi|240849358|ref|NM_001161726.1| Homo sapiens protein phosphata... 28.2 7.3
gi|767980908|ref|XM_005267822.3| PREDICTED: Homo sapiens protei... 28.2 7.3
gi|530404115|ref|XM_005267824.1| PREDICTED: Homo sapiens protei... 28.2 7.3
gi|530404113|ref|XM_005267823.1| PREDICTED: Homo sapiens protei... 28.2 7.3
gi|530404105|ref|XM_005267819.1| PREDICTED: Homo sapiens protei... 28.2 7.3
gi|530404121|ref|XM_005267827.1| PREDICTED: Homo sapiens protei... 28.2 7.3
> gi|71772358|ref|NM_001019.4| Homo sapiens ribosomal protein S15a
(RPS15A), transcript variant 2, mRNA
Length=554
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TGACGTGCAACTCAAAGACC 20
||||||||||||||||||||
Sbjct 333 TGACGTGCAACTCAAAGACC 352
> gi|71772414|ref|NM_001030009.1| Homo sapiens ribosomal protein
S15a (RPS15A), transcript variant 1, mRNA
Length=488
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TGACGTGCAACTCAAAGACC 20
||||||||||||||||||||
Sbjct 267 TGACGTGCAACTCAAAGACC 286
> gi|530404119|ref|XM_005267826.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X12, mRNA
Length=4243
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1090 GCAACTCAAAGACC 1103
> gi|767980917|ref|XM_011536918.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X10, mRNA
Length=4571
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1418 GCAACTCAAAGACC 1431
> gi|1034587451|ref|XM_011536916.2| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X8, mRNA
Length=5416
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 2263 GCAACTCAAAGACC 2276
> gi|1034587450|ref|XM_011536921.2| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X7, mRNA
Length=4336
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1183 GCAACTCAAAGACC 1196
> gi|1034587449|ref|XM_011536914.2| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X5, mRNA
Length=4334
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1181 GCAACTCAAAGACC 1194
> gi|1034587458|ref|XM_017021424.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X17, mRNA
Length=4330
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1294 GCAACTCAAAGACC 1307
> gi|767980921|ref|XM_011536920.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X16, mRNA
Length=4447
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1294 GCAACTCAAAGACC 1307
> gi|1034587454|ref|XM_017021422.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X13, mRNA
Length=4296
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1333 GCAACTCAAAGACC 1346
> gi|1034587453|ref|XM_011536919.2| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X11, mRNA
Length=4553
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1400 GCAACTCAAAGACC 1413
> gi|240849346|ref|NM_178587.2| Homo sapiens protein phosphatase
2 regulatory subunit B', gamma (PPP2R5C), transcript variant
3, mRNA
Length=1623
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1267 GCAACTCAAAGACC 1280
> gi|1034587456|ref|XM_017021423.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X14, mRNA
Length=4230
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1267 GCAACTCAAAGACC 1280
> gi|240849340|ref|NM_178586.2| Homo sapiens protein phosphatase
2 regulatory subunit B', gamma (PPP2R5C), transcript variant
2, mRNA
Length=4328
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1267 GCAACTCAAAGACC 1280
> gi|240849335|ref|NM_002719.3| Homo sapiens protein phosphatase
2 regulatory subunit B', gamma (PPP2R5C), transcript variant
1, mRNA
Length=4445
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1267 GCAACTCAAAGACC 1280
> gi|1034587452|ref|XM_011536915.2| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X9, mRNA
Length=4417
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1264 GCAACTCAAAGACC 1277
> gi|530404107|ref|XM_005267820.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X2, mRNA
Length=4470
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1317 GCAACTCAAAGACC 1330
> gi|240849352|ref|NM_001161725.1| Homo sapiens protein phosphatase
2 regulatory subunit B', gamma (PPP2R5C), transcript variant
5, mRNA
Length=4494
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1316 GCAACTCAAAGACC 1329
> gi|240849358|ref|NM_001161726.1| Homo sapiens protein phosphatase
2 regulatory subunit B', gamma (PPP2R5C), transcript variant
6, mRNA
Length=4449
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1388 GCAACTCAAAGACC 1401
> gi|767980908|ref|XM_005267822.3| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X3, mRNA
Length=1758
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1377 GCAACTCAAAGACC 1390
> gi|530404115|ref|XM_005267824.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X6, mRNA
Length=4340
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1377 GCAACTCAAAGACC 1390
> gi|530404113|ref|XM_005267823.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X4, mRNA
Length=4413
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1377 GCAACTCAAAGACC 1390
> gi|530404105|ref|XM_005267819.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X1, mRNA
Length=4530
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1377 GCAACTCAAAGACC 1390
> gi|530404121|ref|XM_005267827.1| PREDICTED: Homo sapiens protein
phosphatase 2 regulatory subunit B'gamma (PPP2R5C), transcript
variant X15, mRNA
Length=4465
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAACTCAAAGACC 20
||||||||||||||
Sbjct 1312 GCAACTCAAAGACC 1325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2