BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TCTGCTGGGTGTAG (evalue = 10)
Length=14
Score E
Sequences producing significant alignments: (Bits) Value
gi|219842270|ref|NM_006825.3| Homo sapiens cytoskeleton-associa... 28.2 3.7
gi|259155324|ref|NM_001080483.2| Homo sapiens transmembrane pro... 28.2 3.7
gi|356582356|ref|NM_031966.3| Homo sapiens cyclin B1 (CCNB1), mRNA 28.2 3.7
> gi|219842270|ref|NM_006825.3| Homo sapiens cytoskeleton-associated
protein 4 (CKAP4), mRNA
Length=3036
Score = 28.2 bits (14), Expect = 3.7
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TCTGCTGGGTGTAG 14
||||||||||||||
Sbjct 2571 TCTGCTGGGTGTAG 2558
> gi|259155324|ref|NM_001080483.2| Homo sapiens transmembrane protein
8C (TMEM8C), mRNA
Length=818
Score = 28.2 bits (14), Expect = 3.7
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TCTGCTGGGTGTAG 14
||||||||||||||
Sbjct 562 TCTGCTGGGTGTAG 549
> gi|356582356|ref|NM_031966.3| Homo sapiens cyclin B1 (CCNB1),
mRNA
Length=2177
Score = 28.2 bits (14), Expect = 3.7
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCTGCTGGGTGTAG 14
||||||||||||||
Sbjct 170 TCTGCTGGGTGTAG 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1170001578
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2