BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TCGTCTATGCTTCTTCATCAGG (evalue = 10)
Length=22
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034601735|ref|XR_934577.2| PREDICTED: Homo sapiens protein ... 44.1 2e-04
gi|312434022|ref|NM_003620.3| Homo sapiens protein phosphatase,... 44.1 2e-04
gi|767908401|ref|XR_921744.1| PREDICTED: Homo sapiens DC-STAMP ... 32.2 0.71
gi|109240535|ref|NM_144622.2| Homo sapiens DC-STAMP domain cont... 32.2 0.71
gi|1034555480|ref|XM_011509189.2| PREDICTED: Homo sapiens DC-ST... 32.2 0.71
gi|1034555479|ref|XM_011509188.2| PREDICTED: Homo sapiens DC-ST... 32.2 0.71
gi|1034559087|ref|XM_017001447.1| PREDICTED: Homo sapiens hippo... 30.2 2.8
gi|538918344|ref|NM_001282396.1| Homo sapiens hippocalcin like ... 30.2 2.8
gi|538918406|ref|NM_001282397.1| Homo sapiens hippocalcin like ... 30.2 2.8
gi|538260574|ref|NM_016257.3| Homo sapiens hippocalcin like 4 (... 30.2 2.8
gi|1034623909|ref|XM_011528599.2| PREDICTED: Homo sapiens chrom... 30.2 2.8
gi|371502113|ref|NR_045796.1| Homo sapiens chromosome segregati... 30.2 2.8
gi|371502111|ref|NM_001256135.1| Homo sapiens chromosome segreg... 30.2 2.8
gi|371502110|ref|NM_001316.3| Homo sapiens chromosome segregati... 30.2 2.8
> gi|1034601735|ref|XR_934577.2| PREDICTED: Homo sapiens protein
phosphatase, Mg2+/Mn2+ dependent 1D (PPM1D), transcript variant
X1, misc_RNA
Length=4885
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 TCGTCTATGCTTCTTCATCAGG 22
||||||||||||||||||||||
Sbjct 1995 TCGTCTATGCTTCTTCATCAGG 1974
> gi|312434022|ref|NM_003620.3| Homo sapiens protein phosphatase,
Mg2+/Mn2+ dependent 1D (PPM1D), mRNA
Length=4790
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 TCGTCTATGCTTCTTCATCAGG 22
||||||||||||||||||||||
Sbjct 1888 TCGTCTATGCTTCTTCATCAGG 1867
> gi|767908401|ref|XR_921744.1| PREDICTED: Homo sapiens DC-STAMP
domain containing 2 (DCST2), transcript variant X1, misc_RNA
Length=2483
Score = 32.2 bits (16), Expect = 0.71
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 5 CTATGCTTCTTCATCA 20
||||||||||||||||
Sbjct 1605 CTATGCTTCTTCATCA 1620
> gi|109240535|ref|NM_144622.2| Homo sapiens DC-STAMP domain containing
2 (DCST2), mRNA
Length=2421
Score = 32.2 bits (16), Expect = 0.71
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 5 CTATGCTTCTTCATCA 20
||||||||||||||||
Sbjct 1605 CTATGCTTCTTCATCA 1620
> gi|1034555480|ref|XM_011509189.2| PREDICTED: Homo sapiens DC-STAMP
domain containing 2 (DCST2), transcript variant X3, mRNA
Length=2285
Score = 32.2 bits (16), Expect = 0.71
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 5 CTATGCTTCTTCATCA 20
||||||||||||||||
Sbjct 1457 CTATGCTTCTTCATCA 1472
> gi|1034555479|ref|XM_011509188.2| PREDICTED: Homo sapiens DC-STAMP
domain containing 2 (DCST2), transcript variant X2, mRNA
Length=1896
Score = 32.2 bits (16), Expect = 0.71
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 5 CTATGCTTCTTCATCA 20
||||||||||||||||
Sbjct 1068 CTATGCTTCTTCATCA 1083
> gi|1034559087|ref|XM_017001447.1| PREDICTED: Homo sapiens hippocalcin
like 4 (HPCAL4), transcript variant X1, mRNA
Length=4490
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 8 TGCTTCTTCATCAGG 22
|||||||||||||||
Sbjct 2064 TGCTTCTTCATCAGG 2078
> gi|538918344|ref|NM_001282396.1| Homo sapiens hippocalcin like
4 (HPCAL4), transcript variant 2, mRNA
Length=4776
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 8 TGCTTCTTCATCAGG 22
|||||||||||||||
Sbjct 2332 TGCTTCTTCATCAGG 2346
> gi|538918406|ref|NM_001282397.1| Homo sapiens hippocalcin like
4 (HPCAL4), transcript variant 3, mRNA
Length=4454
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 8 TGCTTCTTCATCAGG 22
|||||||||||||||
Sbjct 2010 TGCTTCTTCATCAGG 2024
> gi|538260574|ref|NM_016257.3| Homo sapiens hippocalcin like 4
(HPCAL4), transcript variant 1, mRNA
Length=4895
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 8 TGCTTCTTCATCAGG 22
|||||||||||||||
Sbjct 2451 TGCTTCTTCATCAGG 2465
> gi|1034623909|ref|XM_011528599.2| PREDICTED: Homo sapiens chromosome
segregation 1 like (CSE1L), transcript variant X1, mRNA
Length=3659
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 ATGCTTCTTCATCAG 21
|||||||||||||||
Sbjct 1207 ATGCTTCTTCATCAG 1193
> gi|371502113|ref|NR_045796.1| Homo sapiens chromosome segregation
1 like (CSE1L), transcript variant 3, non-coding RNA
Length=3142
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 ATGCTTCTTCATCAG 21
|||||||||||||||
Sbjct 788 ATGCTTCTTCATCAG 774
> gi|371502111|ref|NM_001256135.1| Homo sapiens chromosome segregation
1 like (CSE1L), transcript variant 2, mRNA
Length=3459
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 ATGCTTCTTCATCAG 21
|||||||||||||||
Sbjct 1105 ATGCTTCTTCATCAG 1091
> gi|371502110|ref|NM_001316.3| Homo sapiens chromosome segregation
1 like (CSE1L), transcript variant 1, mRNA
Length=3627
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 ATGCTTCTTCATCAG 21
|||||||||||||||
Sbjct 1273 ATGCTTCTTCATCAG 1259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 3505770510
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2