BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TCCTCCTGTGACCCTTTCGG (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034664461|ref|XR_929738.2| PREDICTED: Homo sapiens prostagl... 40.1 0.002
gi|1034664463|ref|XM_011518394.2| PREDICTED: Homo sapiens prost... 40.1 0.002
gi|226059158|ref|NM_001146108.1| Homo sapiens prostaglandin red... 40.1 0.002
gi|226056129|ref|NM_001146109.1| Homo sapiens prostaglandin red... 40.1 0.002
gi|974005285|ref|NM_021081.5| Homo sapiens growth hormone relea... 28.2 7.3
gi|974005290|ref|NM_001184731.2| Homo sapiens growth hormone re... 28.2 7.3
gi|1034625012|ref|XM_011528784.2| PREDICTED: Homo sapiens growt... 28.2 7.3
gi|1034625013|ref|XM_011528788.2| PREDICTED: Homo sapiens growt... 28.2 7.3
gi|1034608052|ref|XM_017026839.1| PREDICTED: Homo sapiens NOVA ... 28.2 7.3
gi|564473390|ref|NM_003737.3| Homo sapiens dachsous cadherin-re... 28.2 7.3
gi|208879409|ref|NM_004096.4| Homo sapiens eukaryotic translati... 28.2 7.3
gi|1034652334|ref|XM_005267229.4| PREDICTED: Homo sapiens A-kin... 28.2 7.3
gi|1034556194|ref|XM_011540888.2| PREDICTED: Homo sapiens multi... 28.2 7.3
gi|1034556192|ref|XM_006710406.3| PREDICTED: Homo sapiens multi... 28.2 7.3
gi|1034556193|ref|XM_011540887.2| PREDICTED: Homo sapiens multi... 28.2 7.3
gi|767902852|ref|XM_011540885.1| PREDICTED: Homo sapiens multip... 28.2 7.3
gi|767902854|ref|XM_011540886.1| PREDICTED: Homo sapiens multip... 28.2 7.3
gi|1034556190|ref|XM_017000533.1| PREDICTED: Homo sapiens multi... 28.2 7.3
gi|110347456|ref|NM_001409.3| Homo sapiens multiple EGF like do... 28.2 7.3
gi|1034687822|ref|XR_001735631.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034687821|ref|XR_001735630.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034697130|ref|XM_017030476.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034694423|ref|XR_001757484.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034678799|ref|XM_016999752.1| PREDICTED: Homo sapiens proli... 28.2 7.3
gi|1034554456|ref|XM_011546270.2| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034610397|ref|XR_001753857.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034610395|ref|XR_001753855.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034610396|ref|XR_001753856.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034595084|ref|XR_001751948.1| PREDICTED: Homo sapiens BTG3 ... 28.2 7.3
gi|1034595083|ref|XR_001751947.1| PREDICTED: Homo sapiens BTG3 ... 28.2 7.3
gi|1034595082|ref|XR_001751946.1| PREDICTED: Homo sapiens BTG3 ... 28.2 7.3
gi|1034595081|ref|XR_933353.2| PREDICTED: Homo sapiens BTG3 ass... 28.2 7.3
gi|1034595080|ref|XR_001751945.1| PREDICTED: Homo sapiens BTG3 ... 28.2 7.3
gi|1034579911|ref|XM_017019412.1| PREDICTED: Homo sapiens TAO k... 28.2 7.3
gi|1034579913|ref|XM_017019413.1| PREDICTED: Homo sapiens TAO k... 28.2 7.3
gi|291463312|ref|NM_021002.2| Homo sapiens interferon alpha 6 (... 28.2 7.3
> gi|1034664461|ref|XR_929738.2| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X1, misc_RNA
Length=1508
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TCCTCCTGTGACCCTTTCGG 20
||||||||||||||||||||
Sbjct 94 TCCTCCTGTGACCCTTTCGG 113
> gi|1034664463|ref|XM_011518394.2| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X3, mRNA
Length=1283
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TCCTCCTGTGACCCTTTCGG 20
||||||||||||||||||||
Sbjct 94 TCCTCCTGTGACCCTTTCGG 113
> gi|226059158|ref|NM_001146108.1| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 1, mRNA
Length=1409
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TCCTCCTGTGACCCTTTCGG 20
||||||||||||||||||||
Sbjct 94 TCCTCCTGTGACCCTTTCGG 113
> gi|226056129|ref|NM_001146109.1| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 3, mRNA
Length=1220
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TCCTCCTGTGACCCTTTCGG 20
||||||||||||||||||||
Sbjct 94 TCCTCCTGTGACCCTTTCGG 113
> gi|974005285|ref|NM_021081.5| Homo sapiens growth hormone releasing
hormone (GHRH), transcript variant 1, mRNA
Length=487
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCTCCTGTGACCC 14
||||||||||||||
Sbjct 351 TCCTCCTGTGACCC 364
> gi|974005290|ref|NM_001184731.2| Homo sapiens growth hormone
releasing hormone (GHRH), transcript variant 2, mRNA
Length=484
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCTCCTGTGACCC 14
||||||||||||||
Sbjct 348 TCCTCCTGTGACCC 361
> gi|1034625012|ref|XM_011528784.2| PREDICTED: Homo sapiens growth
hormone releasing hormone (GHRH), transcript variant X1,
mRNA
Length=548
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCTCCTGTGACCC 14
||||||||||||||
Sbjct 426 TCCTCCTGTGACCC 439
> gi|1034625013|ref|XM_011528788.2| PREDICTED: Homo sapiens growth
hormone releasing hormone (GHRH), transcript variant X2,
mRNA
Length=545
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCTCCTGTGACCC 14
||||||||||||||
Sbjct 423 TCCTCCTGTGACCC 436
> gi|1034608052|ref|XM_017026839.1| PREDICTED: Homo sapiens NOVA
alternative splicing regulator 2 (NOVA2), transcript variant
X3, mRNA
Length=5126
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 TGTGACCCTTTCGG 20
||||||||||||||
Sbjct 54 TGTGACCCTTTCGG 67
> gi|564473390|ref|NM_003737.3| Homo sapiens dachsous cadherin-related
1 (DCHS1), mRNA
Length=10765
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGTGACCCTTTC 18
||||||||||||||
Sbjct 2874 CCTGTGACCCTTTC 2887
> gi|208879409|ref|NM_004096.4| Homo sapiens eukaryotic translation
initiation factor 4E binding protein 2 (EIF4EBP2), mRNA
Length=7531
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CTGTGACCCTTTCG 19
||||||||||||||
Sbjct 2301 CTGTGACCCTTTCG 2314
> gi|1034652334|ref|XM_005267229.4| PREDICTED: Homo sapiens A-kinase
anchoring protein 7 (AKAP7), transcript variant X12, mRNA
Length=2939
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TCCTGTGACCCTTT 17
||||||||||||||
Sbjct 196 TCCTGTGACCCTTT 209
> gi|1034556194|ref|XM_011540888.2| PREDICTED: Homo sapiens multiple
EGF like domains 6 (MEGF6), transcript variant X6, mRNA
Length=4604
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3558 CCTCCTGTGACCCT 3571
> gi|1034556192|ref|XM_006710406.3| PREDICTED: Homo sapiens multiple
EGF like domains 6 (MEGF6), transcript variant X4, mRNA
Length=7055
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 2888 CCTCCTGTGACCCT 2901
> gi|1034556193|ref|XM_011540887.2| PREDICTED: Homo sapiens multiple
EGF like domains 6 (MEGF6), transcript variant X5, mRNA
Length=6933
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 2766 CCTCCTGTGACCCT 2779
> gi|767902852|ref|XM_011540885.1| PREDICTED: Homo sapiens multiple
EGF like domains 6 (MEGF6), transcript variant X1, mRNA
Length=7725
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3558 CCTCCTGTGACCCT 3571
> gi|767902854|ref|XM_011540886.1| PREDICTED: Homo sapiens multiple
EGF like domains 6 (MEGF6), transcript variant X2, mRNA
Length=7596
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3558 CCTCCTGTGACCCT 3571
> gi|1034556190|ref|XM_017000533.1| PREDICTED: Homo sapiens multiple
EGF like domains 6 (MEGF6), transcript variant X3, mRNA
Length=7593
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3426 CCTCCTGTGACCCT 3439
> gi|110347456|ref|NM_001409.3| Homo sapiens multiple EGF like
domains 6 (MEGF6), mRNA
Length=7450
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3253 CCTCCTGTGACCCT 3266
> gi|1034687822|ref|XR_001735631.1| PREDICTED: Homo sapiens uncharacterized
LOC105372263 (LOC105372263), transcript variant
X3, ncRNA
Length=2383
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CTCCTGTGACCCTT 16
||||||||||||||
Sbjct 1557 CTCCTGTGACCCTT 1544
> gi|1034687821|ref|XR_001735630.1| PREDICTED: Homo sapiens uncharacterized
LOC105372263 (LOC105372263), transcript variant
X1, ncRNA
Length=1916
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CTCCTGTGACCCTT 16
||||||||||||||
Sbjct 1090 CTCCTGTGACCCTT 1077
> gi|1034697130|ref|XM_017030476.1| PREDICTED: Homo sapiens uncharacterized
LOC105379561 (LOC105379561), transcript variant
X9, mRNA
Length=1741
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGTGACCCTTTC 18
||||||||||||||
Sbjct 1637 CCTGTGACCCTTTC 1624
> gi|1034694423|ref|XR_001757484.1| PREDICTED: Homo sapiens uncharacterized
LOC107987502 (LOC107987502), ncRNA
Length=637
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGTGACCCTTTC 18
||||||||||||||
Sbjct 512 CCTGTGACCCTTTC 499
> gi|1034678799|ref|XM_016999752.1| PREDICTED: Homo sapiens proline-rich
extensin-like protein EPR1 (LOC105378947), transcript
variant X2, mRNA
Length=4659
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGTGACCCTTTC 18
||||||||||||||
Sbjct 3168 CCTGTGACCCTTTC 3155
> gi|1034554456|ref|XM_011546270.2| PREDICTED: Homo sapiens uncharacterized
LOC105379561 (LOC105379561), transcript variant
X4, mRNA
Length=1478
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGTGACCCTTTC 18
||||||||||||||
Sbjct 1331 CCTGTGACCCTTTC 1318
> gi|1034610397|ref|XR_001753857.1| PREDICTED: Homo sapiens uncharacterized
LOC105372263 (LOC105372263), transcript variant
X3, ncRNA
Length=2384
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CTCCTGTGACCCTT 16
||||||||||||||
Sbjct 1557 CTCCTGTGACCCTT 1544
> gi|1034610395|ref|XR_001753855.1| PREDICTED: Homo sapiens uncharacterized
LOC105372263 (LOC105372263), transcript variant
X1, ncRNA
Length=1917
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CTCCTGTGACCCTT 16
||||||||||||||
Sbjct 1090 CTCCTGTGACCCTT 1077
> gi|1034610396|ref|XR_001753856.1| PREDICTED: Homo sapiens uncharacterized
LOC105372263 (LOC105372263), transcript variant
X2, ncRNA
Length=1922
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CTCCTGTGACCCTT 16
||||||||||||||
Sbjct 1095 CTCCTGTGACCCTT 1082
> gi|1034595084|ref|XR_001751948.1| PREDICTED: Homo sapiens BTG3
associated nuclear protein (BANP), transcript variant X26,
misc_RNA
Length=5150
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3265 CCTCCTGTGACCCT 3252
> gi|1034595083|ref|XR_001751947.1| PREDICTED: Homo sapiens BTG3
associated nuclear protein (BANP), transcript variant X25,
misc_RNA
Length=5271
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3385 CCTCCTGTGACCCT 3372
> gi|1034595082|ref|XR_001751946.1| PREDICTED: Homo sapiens BTG3
associated nuclear protein (BANP), transcript variant X24,
misc_RNA
Length=5511
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3624 CCTCCTGTGACCCT 3611
> gi|1034595081|ref|XR_933353.2| PREDICTED: Homo sapiens BTG3 associated
nuclear protein (BANP), transcript variant X23, misc_RNA
Length=5544
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3657 CCTCCTGTGACCCT 3644
> gi|1034595080|ref|XR_001751945.1| PREDICTED: Homo sapiens BTG3
associated nuclear protein (BANP), transcript variant X22,
misc_RNA
Length=5631
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CCTCCTGTGACCCT 15
||||||||||||||
Sbjct 3744 CCTCCTGTGACCCT 3731
> gi|1034579911|ref|XM_017019412.1| PREDICTED: Homo sapiens TAO
kinase 3 (TAOK3), transcript variant X10, mRNA
Length=5404
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGTGACCCTTTC 18
||||||||||||||
Sbjct 1416 CCTGTGACCCTTTC 1403
> gi|1034579913|ref|XM_017019413.1| PREDICTED: Homo sapiens TAO
kinase 3 (TAOK3), transcript variant X11, mRNA
Length=5377
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGTGACCCTTTC 18
||||||||||||||
Sbjct 1416 CCTGTGACCCTTTC 1403
> gi|291463312|ref|NM_021002.2| Homo sapiens interferon alpha 6
(IFNA6), mRNA
Length=570
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 TCCTCCTGTGACCC 14
||||||||||||||
Sbjct 109 TCCTCCTGTGACCC 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2