BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TCCCAATGCTAAGGAGATGC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|38202203|ref|NM_016107.3| Homo sapiens zinc finger RNA bindi... 40.1 0.002
gi|1034645242|ref|XR_427659.2| PREDICTED: Homo sapiens zinc fin... 40.1 0.002
gi|1034698243|ref|XR_957962.2| PREDICTED: Homo sapiens uncharac... 30.2 1.9
gi|1034579240|ref|XM_005253351.3| PREDICTED: Homo sapiens gluta... 30.2 1.9
gi|1034579238|ref|XM_017019219.1| PREDICTED: Homo sapiens gluta... 30.2 1.9
gi|1034579237|ref|XM_011520628.2| PREDICTED: Homo sapiens gluta... 30.2 1.9
gi|1034579236|ref|XM_011520629.2| PREDICTED: Homo sapiens gluta... 30.2 1.9
gi|1034672527|ref|XR_929549.2| PREDICTED: Homo sapiens uncharac... 30.2 1.9
gi|1034685406|ref|XR_001733804.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034685405|ref|XR_001733803.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034596856|ref|XR_001752060.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034596855|ref|XR_001752059.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034646294|ref|XM_017009902.1| PREDICTED: Homo sapiens F-box... 28.2 7.3
gi|1034646289|ref|XM_011537684.2| PREDICTED: Homo sapiens F-box... 28.2 7.3
gi|1034646292|ref|XM_017009901.1| PREDICTED: Homo sapiens F-box... 28.2 7.3
gi|1034646290|ref|XM_017009900.1| PREDICTED: Homo sapiens F-box... 28.2 7.3
gi|1034646286|ref|XR_001742284.1| PREDICTED: Homo sapiens F-box... 28.2 7.3
gi|1034646287|ref|XM_017009899.1| PREDICTED: Homo sapiens F-box... 28.2 7.3
gi|578810916|ref|XM_006714797.1| PREDICTED: Homo sapiens F-box ... 28.2 7.3
gi|530380687|ref|XM_005268513.1| PREDICTED: Homo sapiens F-box ... 28.2 7.3
gi|411147432|ref|NM_001271723.1| Homo sapiens F-box protein 38 ... 28.2 7.3
gi|411147431|ref|NM_030793.4| Homo sapiens F-box protein 38 (FB... 28.2 7.3
gi|188497631|ref|NM_022373.4| Homo sapiens HERPUD family member... 28.2 7.3
gi|578813595|ref|XM_006715765.1| PREDICTED: Homo sapiens HERPUD... 28.2 7.3
gi|1034656512|ref|XM_017012506.1| PREDICTED: Homo sapiens HERPU... 28.2 7.3
gi|767945688|ref|XM_011515473.1| PREDICTED: Homo sapiens HERPUD... 28.2 7.3
> gi|38202203|ref|NM_016107.3| Homo sapiens zinc finger RNA binding
protein (ZFR), mRNA
Length=4746
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGGAGATGC 20
||||||||||||||||||||
Sbjct 1859 TCCCAATGCTAAGGAGATGC 1878
> gi|1034645242|ref|XR_427659.2| PREDICTED: Homo sapiens zinc finger
RNA binding protein (ZFR), transcript variant X1, misc_RNA
Length=4617
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGGAGATGC 20
||||||||||||||||||||
Sbjct 1859 TCCCAATGCTAAGGAGATGC 1878
> gi|1034698243|ref|XR_957962.2| PREDICTED: Homo sapiens uncharacterized
LOC105376013 (LOC105376013), ncRNA
Length=2652
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGAT 18
|||||||||||||||
Sbjct 1796 CAATGCTAAGGAGAT 1782
> gi|1034579240|ref|XM_005253351.3| PREDICTED: Homo sapiens glutamate
ionotropic receptor NMDA type subunit 2B (GRIN2B), transcript
variant X4, mRNA
Length=27807
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGAT 18
|||||||||||||||
Sbjct 10009 CAATGCTAAGGAGAT 9995
> gi|1034579238|ref|XM_017019219.1| PREDICTED: Homo sapiens glutamate
ionotropic receptor NMDA type subunit 2B (GRIN2B), transcript
variant X3, mRNA
Length=30428
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGAT 18
|||||||||||||||
Sbjct 12630 CAATGCTAAGGAGAT 12616
> gi|1034579237|ref|XM_011520628.2| PREDICTED: Homo sapiens glutamate
ionotropic receptor NMDA type subunit 2B (GRIN2B), transcript
variant X2, mRNA
Length=30873
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGAT 18
|||||||||||||||
Sbjct 13075 CAATGCTAAGGAGAT 13061
> gi|1034579236|ref|XM_011520629.2| PREDICTED: Homo sapiens glutamate
ionotropic receptor NMDA type subunit 2B (GRIN2B), transcript
variant X1, mRNA
Length=30680
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGAT 18
|||||||||||||||
Sbjct 12882 CAATGCTAAGGAGAT 12868
> gi|1034672527|ref|XR_929549.2| PREDICTED: Homo sapiens uncharacterized
LOC105376013 (LOC105376013), ncRNA
Length=2651
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGAT 18
|||||||||||||||
Sbjct 1796 CAATGCTAAGGAGAT 1782
> gi|1034685406|ref|XR_001733804.1| PREDICTED: Homo sapiens uncharacterized
LOC101929732 (LOC101929732), transcript variant
X2, ncRNA
Length=3705
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 ATGCTAAGGAGATG 19
||||||||||||||
Sbjct 960 ATGCTAAGGAGATG 973
> gi|1034685405|ref|XR_001733803.1| PREDICTED: Homo sapiens uncharacterized
LOC101929732 (LOC101929732), transcript variant
X1, ncRNA
Length=3796
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 ATGCTAAGGAGATG 19
||||||||||||||
Sbjct 960 ATGCTAAGGAGATG 973
> gi|1034596856|ref|XR_001752060.1| PREDICTED: Homo sapiens uncharacterized
LOC101929732 (LOC101929732), transcript variant
X2, ncRNA
Length=3705
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 ATGCTAAGGAGATG 19
||||||||||||||
Sbjct 960 ATGCTAAGGAGATG 973
> gi|1034596855|ref|XR_001752059.1| PREDICTED: Homo sapiens uncharacterized
LOC101929732 (LOC101929732), transcript variant
X1, ncRNA
Length=3796
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 ATGCTAAGGAGATG 19
||||||||||||||
Sbjct 960 ATGCTAAGGAGATG 973
> gi|1034646294|ref|XM_017009902.1| PREDICTED: Homo sapiens F-box
protein 38 (FBXO38), transcript variant X8, mRNA
Length=4241
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 683 TCCCAATGCTAAGG 696
> gi|1034646289|ref|XM_011537684.2| PREDICTED: Homo sapiens F-box
protein 38 (FBXO38), transcript variant X5, mRNA
Length=4466
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 683 TCCCAATGCTAAGG 696
> gi|1034646292|ref|XM_017009901.1| PREDICTED: Homo sapiens F-box
protein 38 (FBXO38), transcript variant X7, mRNA
Length=4253
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 683 TCCCAATGCTAAGG 696
> gi|1034646290|ref|XM_017009900.1| PREDICTED: Homo sapiens F-box
protein 38 (FBXO38), transcript variant X6, mRNA
Length=4625
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 683 TCCCAATGCTAAGG 696
> gi|1034646286|ref|XR_001742284.1| PREDICTED: Homo sapiens F-box
protein 38 (FBXO38), transcript variant X3, misc_RNA
Length=4328
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 766 TCCCAATGCTAAGG 779
> gi|1034646287|ref|XM_017009899.1| PREDICTED: Homo sapiens F-box
protein 38 (FBXO38), transcript variant X4, mRNA
Length=4561
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 766 TCCCAATGCTAAGG 779
> gi|578810916|ref|XM_006714797.1| PREDICTED: Homo sapiens F-box
protein 38 (FBXO38), transcript variant X2, mRNA
Length=4287
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 777 TCCCAATGCTAAGG 790
> gi|530380687|ref|XM_005268513.1| PREDICTED: Homo sapiens F-box
protein 38 (FBXO38), transcript variant X1, mRNA
Length=4413
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 777 TCCCAATGCTAAGG 790
> gi|411147432|ref|NM_001271723.1| Homo sapiens F-box protein 38
(FBXO38), transcript variant 3, mRNA
Length=3712
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 788 TCCCAATGCTAAGG 801
> gi|411147431|ref|NM_030793.4| Homo sapiens F-box protein 38 (FBXO38),
transcript variant 1, mRNA
Length=4222
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TCCCAATGCTAAGG 14
||||||||||||||
Sbjct 788 TCCCAATGCTAAGG 801
> gi|188497631|ref|NM_022373.4| Homo sapiens HERPUD family member
2 (HERPUD2), mRNA
Length=2932
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGA 17
||||||||||||||
Sbjct 1536 CAATGCTAAGGAGA 1523
> gi|578813595|ref|XM_006715765.1| PREDICTED: Homo sapiens HERPUD
family member 2 (HERPUD2), transcript variant X3, mRNA
Length=2719
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGA 17
||||||||||||||
Sbjct 1344 CAATGCTAAGGAGA 1331
> gi|1034656512|ref|XM_017012506.1| PREDICTED: Homo sapiens HERPUD
family member 2 (HERPUD2), transcript variant X1, mRNA
Length=3109
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGA 17
||||||||||||||
Sbjct 1734 CAATGCTAAGGAGA 1721
> gi|767945688|ref|XM_011515473.1| PREDICTED: Homo sapiens HERPUD
family member 2 (HERPUD2), transcript variant X2, mRNA
Length=2917
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CAATGCTAAGGAGA 17
||||||||||||||
Sbjct 1542 CAATGCTAAGGAGA 1529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2