BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TCCAGGATGTGACCAAGCC (evalue = 10)
Length=19
Score E
Sequences producing significant alignments: (Bits) Value
gi|589811556|ref|NM_001290230.1| Homo sapiens cyclin-dependent ... 38.2 0.006
gi|589811555|ref|NM_052827.3| Homo sapiens cyclin-dependent kin... 38.2 0.006
gi|589811554|ref|NM_001798.4| Homo sapiens cyclin-dependent kin... 38.2 0.006
gi|767972771|ref|XM_011537732.1| PREDICTED: Homo sapiens cyclin... 38.2 0.006
gi|767883173|ref|XR_949425.1| PREDICTED: Homo sapiens uncharact... 32.2 0.35
gi|521258687|ref|NM_001278655.1| Homo sapiens long intergenic n... 32.2 0.35
gi|1034619952|ref|XM_006723680.3| PREDICTED: Homo sapiens long ... 32.2 0.35
gi|767933176|ref|XR_938829.1| PREDICTED: Homo sapiens uncharact... 32.2 0.35
gi|750321428|ref|NM_001304438.1| Homo sapiens transmembrane pro... 30.2 1.4
gi|1034684275|ref|XR_001733298.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|1034684276|ref|XR_915363.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034684277|ref|XR_001733299.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|1034698833|ref|XR_001759650.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|333360859|ref|NM_001207018.1| Homo sapiens smoothelin (SMTN)... 28.2 5.5
gi|333360857|ref|NM_001207017.1| Homo sapiens smoothelin (SMTN)... 28.2 5.5
gi|578837340|ref|XM_006724298.1| PREDICTED: Homo sapiens smooth... 28.2 5.5
gi|578837348|ref|XM_006724302.1| PREDICTED: Homo sapiens smooth... 28.2 5.5
gi|1034629358|ref|XM_011530338.2| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629359|ref|XM_017028919.1| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629346|ref|XM_017028914.1| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629348|ref|XM_017028915.1| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629345|ref|XM_011530333.2| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629361|ref|XM_011530339.2| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629362|ref|XM_011530340.2| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629356|ref|XM_017028918.1| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629354|ref|XM_011530336.2| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629355|ref|XM_011530337.2| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629352|ref|XM_017028917.1| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629350|ref|XM_017028916.1| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|1034629343|ref|XM_017028913.1| PREDICTED: Homo sapiens smoot... 28.2 5.5
gi|333360853|ref|NM_006932.4| Homo sapiens smoothelin (SMTN), t... 28.2 5.5
gi|333360855|ref|NM_134270.2| Homo sapiens smoothelin (SMTN), t... 28.2 5.5
gi|333360854|ref|NM_134269.2| Homo sapiens smoothelin (SMTN), t... 28.2 5.5
gi|1034588814|ref|XR_001750656.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|1034588812|ref|XR_001750654.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|1034588813|ref|XR_943611.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034672982|ref|XR_001746881.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|751868083|ref|NM_015475.4| Homo sapiens family with sequence... 28.2 5.5
gi|751868074|ref|NM_001304538.1| Homo sapiens family with seque... 28.2 5.5
gi|1034611688|ref|XM_006711859.3| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|297206742|ref|NM_001033081.2| Homo sapiens v-myc avian myelo... 28.2 5.5
gi|296923784|ref|NM_001033082.2| Homo sapiens v-myc avian myelo... 28.2 5.5
> gi|589811556|ref|NM_001290230.1| Homo sapiens cyclin-dependent
kinase 2 (CDK2), transcript variant 3, mRNA
Length=2121
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 TCCAGGATGTGACCAAGCC 19
|||||||||||||||||||
Sbjct 917 TCCAGGATGTGACCAAGCC 935
> gi|589811555|ref|NM_052827.3| Homo sapiens cyclin-dependent kinase
2 (CDK2), transcript variant 2, mRNA
Length=2199
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 TCCAGGATGTGACCAAGCC 19
|||||||||||||||||||
Sbjct 995 TCCAGGATGTGACCAAGCC 1013
> gi|589811554|ref|NM_001798.4| Homo sapiens cyclin-dependent kinase
2 (CDK2), transcript variant 1, mRNA
Length=2301
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 TCCAGGATGTGACCAAGCC 19
|||||||||||||||||||
Sbjct 1097 TCCAGGATGTGACCAAGCC 1115
> gi|767972771|ref|XM_011537732.1| PREDICTED: Homo sapiens cyclin-dependent
kinase 2 (CDK2), transcript variant X1, mRNA
Length=2445
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 TCCAGGATGTGACCAAGCC 19
|||||||||||||||||||
Sbjct 1241 TCCAGGATGTGACCAAGCC 1259
> gi|767883173|ref|XR_949425.1| PREDICTED: Homo sapiens uncharacterized
LOC105377256 (LOC105377256), transcript variant X1,
ncRNA
Length=3685
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 TCCAGGATGTGACCAA 16
||||||||||||||||
Sbjct 2357 TCCAGGATGTGACCAA 2372
> gi|521258687|ref|NM_001278655.1| Homo sapiens long intergenic
non-protein coding RNA 1272 (LINC01272), mRNA
Length=2028
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 1 TCCAGGATGTGACCAA 16
||||||||||||||||
Sbjct 1143 TCCAGGATGTGACCAA 1128
> gi|1034619952|ref|XM_006723680.3| PREDICTED: Homo sapiens long
intergenic non-protein coding RNA 1272 (LINC01272), transcript
variant X1, mRNA
Length=2016
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 1 TCCAGGATGTGACCAA 16
||||||||||||||||
Sbjct 1156 TCCAGGATGTGACCAA 1141
> gi|767933176|ref|XR_938829.1| PREDICTED: Homo sapiens uncharacterized
LOC105377256 (LOC105377256), transcript variant X1,
ncRNA
Length=3685
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 TCCAGGATGTGACCAA 16
||||||||||||||||
Sbjct 2357 TCCAGGATGTGACCAA 2372
> gi|750321428|ref|NM_001304438.1| Homo sapiens transmembrane protein
132E (TMEM132E), mRNA
Length=4680
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 5 GGATGTGACCAAGCC 19
|||||||||||||||
Sbjct 250 GGATGTGACCAAGCC 264
> gi|1034684275|ref|XR_001733298.1| PREDICTED: Homo sapiens uncharacterized
LOC105370409 (LOC105370409), transcript variant
X1, ncRNA
Length=4646
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CAGGATGTGACCAA 16
||||||||||||||
Sbjct 3005 CAGGATGTGACCAA 2992
> gi|1034684276|ref|XR_915363.2| PREDICTED: Homo sapiens uncharacterized
LOC105370409 (LOC105370409), transcript variant X2,
ncRNA
Length=4467
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CAGGATGTGACCAA 16
||||||||||||||
Sbjct 3005 CAGGATGTGACCAA 2992
> gi|1034684277|ref|XR_001733299.1| PREDICTED: Homo sapiens uncharacterized
LOC105370409 (LOC105370409), transcript variant
X3, ncRNA
Length=4668
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CAGGATGTGACCAA 16
||||||||||||||
Sbjct 3027 CAGGATGTGACCAA 3014
> gi|1034698833|ref|XR_001759650.1| PREDICTED: Homo sapiens uncharacterized
LOC105376214 (LOC105376214), transcript variant
X1, ncRNA
Length=5792
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GGATGTGACCAAGC 18
||||||||||||||
Sbjct 3043 GGATGTGACCAAGC 3030
> gi|333360859|ref|NM_001207018.1| Homo sapiens smoothelin (SMTN),
transcript variant 5, mRNA
Length=3336
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 788 CCAGGATGTGACCA 801
> gi|333360857|ref|NM_001207017.1| Homo sapiens smoothelin (SMTN),
transcript variant 4, mRNA
Length=3242
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 766 CCAGGATGTGACCA 779
> gi|578837340|ref|XM_006724298.1| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X6, mRNA
Length=3224
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 762 CCAGGATGTGACCA 775
> gi|578837348|ref|XM_006724302.1| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X13, mRNA
Length=3283
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 821 CCAGGATGTGACCA 834
> gi|1034629358|ref|XM_011530338.2| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X11, mRNA
Length=3008
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 867 CCAGGATGTGACCA 880
> gi|1034629359|ref|XM_017028919.1| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X12, mRNA
Length=3173
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 867 CCAGGATGTGACCA 880
> gi|1034629346|ref|XM_017028914.1| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X3, mRNA
Length=3236
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 867 CCAGGATGTGACCA 880
> gi|1034629348|ref|XM_017028915.1| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X4, mRNA
Length=3401
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 867 CCAGGATGTGACCA 880
> gi|1034629345|ref|XM_011530333.2| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X2, mRNA
Length=3494
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 867 CCAGGATGTGACCA 880
> gi|1034629361|ref|XM_011530339.2| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X14, mRNA
Length=3154
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 868 CCAGGATGTGACCA 881
> gi|1034629362|ref|XM_011530340.2| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X15, mRNA
Length=3116
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 868 CCAGGATGTGACCA 881
> gi|1034629356|ref|XM_017028918.1| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X10, mRNA
Length=3060
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 868 CCAGGATGTGACCA 881
> gi|1034629354|ref|XM_011530336.2| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X8, mRNA
Length=3102
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 868 CCAGGATGTGACCA 881
> gi|1034629355|ref|XM_011530337.2| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X9, mRNA
Length=3267
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 868 CCAGGATGTGACCA 881
> gi|1034629352|ref|XM_017028917.1| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X7, mRNA
Length=3212
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 868 CCAGGATGTGACCA 881
> gi|1034629350|ref|XM_017028916.1| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X5, mRNA
Length=3377
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 868 CCAGGATGTGACCA 881
> gi|1034629343|ref|XM_017028913.1| PREDICTED: Homo sapiens smoothelin
(SMTN), transcript variant X1, mRNA
Length=3330
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 868 CCAGGATGTGACCA 881
> gi|333360853|ref|NM_006932.4| Homo sapiens smoothelin (SMTN),
transcript variant 3, mRNA
Length=3175
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 784 CCAGGATGTGACCA 797
> gi|333360855|ref|NM_134270.2| Homo sapiens smoothelin (SMTN),
transcript variant 1, mRNA
Length=3236
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 784 CCAGGATGTGACCA 797
> gi|333360854|ref|NM_134269.2| Homo sapiens smoothelin (SMTN),
transcript variant 2, mRNA
Length=3332
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 784 CCAGGATGTGACCA 797
> gi|1034588814|ref|XR_001750656.1| PREDICTED: Homo sapiens uncharacterized
LOC105370409 (LOC105370409), transcript variant
X3, ncRNA
Length=4666
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CAGGATGTGACCAA 16
||||||||||||||
Sbjct 3025 CAGGATGTGACCAA 3012
> gi|1034588812|ref|XR_001750654.1| PREDICTED: Homo sapiens uncharacterized
LOC105370409 (LOC105370409), transcript variant
X1, ncRNA
Length=4646
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CAGGATGTGACCAA 16
||||||||||||||
Sbjct 3005 CAGGATGTGACCAA 2992
> gi|1034588813|ref|XR_943611.2| PREDICTED: Homo sapiens uncharacterized
LOC105370409 (LOC105370409), transcript variant X2,
ncRNA
Length=4467
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CAGGATGTGACCAA 16
||||||||||||||
Sbjct 3005 CAGGATGTGACCAA 2992
> gi|1034672982|ref|XR_001746881.1| PREDICTED: Homo sapiens uncharacterized
LOC105376214 (LOC105376214), transcript variant
X1, ncRNA
Length=5792
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GGATGTGACCAAGC 18
||||||||||||||
Sbjct 3043 GGATGTGACCAAGC 3030
> gi|751868083|ref|NM_015475.4| Homo sapiens family with sequence
similarity 98 member A (FAM98A), transcript variant 1, mRNA
Length=2829
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GGATGTGACCAAGC 18
||||||||||||||
Sbjct 429 GGATGTGACCAAGC 442
> gi|751868074|ref|NM_001304538.1| Homo sapiens family with sequence
similarity 98 member A (FAM98A), transcript variant 2,
mRNA
Length=2644
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GGATGTGACCAAGC 18
||||||||||||||
Sbjct 429 GGATGTGACCAAGC 442
> gi|1034611688|ref|XM_006711859.3| PREDICTED: Homo sapiens chromosome
2 open reading frame 50 (C2orf50), transcript variant
X2, mRNA
Length=4078
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CCAGGATGTGACCA 15
||||||||||||||
Sbjct 2525 CCAGGATGTGACCA 2512
> gi|297206742|ref|NM_001033081.2| Homo sapiens v-myc avian myelocytomatosis
viral oncogene lung carcinoma derived homolog
(MYCL), transcript variant 1, mRNA
Length=3624
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGGATGTGACCAAG 17
||||||||||||||
Sbjct 1414 AGGATGTGACCAAG 1427
> gi|296923784|ref|NM_001033082.2| Homo sapiens v-myc avian myelocytomatosis
viral oncogene lung carcinoma derived homolog
(MYCL), transcript variant 2, mRNA
Length=3260
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGGATGTGACCAAG 17
||||||||||||||
Sbjct 1050 AGGATGTGACCAAG 1063
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1752885255
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2