BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= TAGGACCGAGAGGCAAAGAC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|283135239|ref|NM_020155.3| Homo sapiens G protein-coupled re... 40.1 0.002
gi|283135241|ref|NM_001170880.1| Homo sapiens G protein-coupled... 40.1 0.002
gi|767968521|ref|XM_005274100.2| PREDICTED: Homo sapiens G prot... 40.1 0.002
gi|767968523|ref|XM_011545169.1| PREDICTED: Homo sapiens G prot... 40.1 0.002
gi|1034574555|ref|XM_017018015.1| PREDICTED: Homo sapiens G pro... 40.1 0.002
gi|767968522|ref|XM_005274104.2| PREDICTED: Homo sapiens G prot... 40.1 0.002
gi|767968520|ref|XM_005274102.2| PREDICTED: Homo sapiens G prot... 40.1 0.002
gi|283135213|ref|NM_001170881.1| Homo sapiens G protein-coupled... 40.1 0.002
gi|767968519|ref|XM_005274101.2| PREDICTED: Homo sapiens G prot... 40.1 0.002
gi|1034574553|ref|XM_017018014.1| PREDICTED: Homo sapiens G pro... 40.1 0.002
gi|283135191|ref|NM_001170726.1| Homo sapiens G protein-coupled... 40.1 0.002
gi|1034574557|ref|XM_017018016.1| PREDICTED: Homo sapiens G pro... 40.1 0.002
gi|1034574559|ref|XM_011545171.2| PREDICTED: Homo sapiens G pro... 40.1 0.002
gi|1034574551|ref|XM_011545168.2| PREDICTED: Homo sapiens G pro... 40.1 0.002
gi|1034574552|ref|XM_011545170.2| PREDICTED: Homo sapiens G pro... 40.1 0.002
gi|183396766|ref|NM_004615.3| Homo sapiens tetraspanin 7 (TSPAN... 30.2 1.9
gi|223468580|ref|NR_026813.1| Homo sapiens long intergenic non-... 30.2 1.9
gi|260593736|ref|NM_001166053.1| Homo sapiens amyloid beta prec... 28.2 7.3
gi|343098501|ref|NR_033118.2| Homo sapiens Zic family member 4 ... 28.2 7.3
gi|343098502|ref|NR_033119.2| Homo sapiens Zic family member 4 ... 28.2 7.3
gi|343098506|ref|NR_040762.1| Homo sapiens Zic family member 4 ... 28.2 7.3
> gi|283135239|ref|NM_020155.3| Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant 3, mRNA
Length=1822
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1374 TAGGACCGAGAGGCAAAGAC 1355
> gi|283135241|ref|NM_001170880.1| Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant 2, mRNA
Length=1928
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1374 TAGGACCGAGAGGCAAAGAC 1355
> gi|767968521|ref|XM_005274100.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X4,
mRNA
Length=1813
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1389 TAGGACCGAGAGGCAAAGAC 1370
> gi|767968523|ref|XM_011545169.1| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X6,
mRNA
Length=1442
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1018 TAGGACCGAGAGGCAAAGAC 999
> gi|1034574555|ref|XM_017018015.1| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X9,
mRNA
Length=1548
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1018 TAGGACCGAGAGGCAAAGAC 999
> gi|767968522|ref|XM_005274104.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X5,
mRNA
Length=1477
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1053 TAGGACCGAGAGGCAAAGAC 1034
> gi|767968520|ref|XM_005274102.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X3,
mRNA
Length=1529
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1105 TAGGACCGAGAGGCAAAGAC 1086
> gi|283135213|ref|NM_001170881.1| Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant 1, mRNA
Length=1946
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1392 TAGGACCGAGAGGCAAAGAC 1373
> gi|767968519|ref|XM_005274101.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X2,
mRNA
Length=2013
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1589 TAGGACCGAGAGGCAAAGAC 1570
> gi|1034574553|ref|XM_017018014.1| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X8,
mRNA
Length=2119
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1589 TAGGACCGAGAGGCAAAGAC 1570
> gi|283135191|ref|NM_001170726.1| Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant 4, mRNA
Length=1609
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1161 TAGGACCGAGAGGCAAAGAC 1142
> gi|1034574557|ref|XM_017018016.1| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X10,
mRNA
Length=1573
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1149 TAGGACCGAGAGGCAAAGAC 1130
> gi|1034574559|ref|XM_011545171.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X11,
mRNA
Length=1679
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1149 TAGGACCGAGAGGCAAAGAC 1130
> gi|1034574551|ref|XM_011545168.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X1,
mRNA
Length=1723
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1299 TAGGACCGAGAGGCAAAGAC 1280
> gi|1034574552|ref|XM_011545170.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X7,
mRNA
Length=1829
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 TAGGACCGAGAGGCAAAGAC 20
||||||||||||||||||||
Sbjct 1299 TAGGACCGAGAGGCAAAGAC 1280
> gi|183396766|ref|NM_004615.3| Homo sapiens tetraspanin 7 (TSPAN7),
mRNA
Length=1816
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 5 ACCGAGAGGCAAAGA 19
|||||||||||||||
Sbjct 1498 ACCGAGAGGCAAAGA 1484
> gi|223468580|ref|NR_026813.1| Homo sapiens long intergenic non-protein
coding RNA 597 (LINC00597), long non-coding RNA
Length=1512
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 2 AGGACCGAGAGGCAAAGAC 20
|||||| ||||||||||||
Sbjct 442 AGGACCTAGAGGCAAAGAC 460
> gi|260593736|ref|NM_001166053.1| Homo sapiens amyloid beta precursor
protein binding family B member 2 (APBB2), transcript
variant 6, mRNA
Length=7018
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 AGGACCGAGAGGCAAAGA 19
||||||| ||||||||||
Sbjct 151 AGGACCGGGAGGCAAAGA 168
> gi|343098501|ref|NR_033118.2| Homo sapiens Zic family member
4 (ZIC4), transcript variant 4, non-coding RNA
Length=3589
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TAGGACCGAGAGGC 14
||||||||||||||
Sbjct 284 TAGGACCGAGAGGC 297
> gi|343098502|ref|NR_033119.2| Homo sapiens Zic family member
4 (ZIC4), transcript variant 5, non-coding RNA
Length=3535
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TAGGACCGAGAGGC 14
||||||||||||||
Sbjct 284 TAGGACCGAGAGGC 297
> gi|343098506|ref|NR_040762.1| Homo sapiens Zic family member
4 (ZIC4), transcript variant 7, non-coding RNA
Length=3436
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 TAGGACCGAGAGGC 14
||||||||||||||
Sbjct 284 TAGGACCGAGAGGC 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2