BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GTTCCTCCTTGGAAAGCAAAC (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|166197663|ref|NM_001237.3| Homo sapiens cyclin A2 (CCNA2), mRNA 42.1 6e-04
gi|1034630510|ref|XR_001755617.1| PREDICTED: Homo sapiens uncha... 32.2 0.59
gi|589269287|ref|NR_110873.1| Homo sapiens uncharacterized LOC1... 32.2 0.59
gi|1034563735|ref|XM_017002952.1| PREDICTED: Homo sapiens leuci... 32.2 0.59
gi|731189666|ref|NM_014813.2| Homo sapiens leucine-rich repeats... 32.2 0.59
gi|917958878|ref|NM_001312686.1| Homo sapiens leucine-rich repe... 32.2 0.59
gi|1034563734|ref|XM_005271369.2| PREDICTED: Homo sapiens leuci... 32.2 0.59
gi|1034588684|ref|XM_005268230.4| PREDICTED: Homo sapiens CDC42... 30.2 2.3
gi|767982066|ref|XM_011537387.1| PREDICTED: Homo sapiens CDC42 ... 30.2 2.3
gi|530404956|ref|XM_005268227.1| PREDICTED: Homo sapiens CDC42 ... 30.2 2.3
gi|767982068|ref|XR_943564.1| PREDICTED: Homo sapiens CDC42 bin... 30.2 2.3
gi|530404958|ref|XM_005268228.1| PREDICTED: Homo sapiens CDC42 ... 30.2 2.3
gi|530404960|ref|XM_005268229.1| PREDICTED: Homo sapiens CDC42 ... 30.2 2.3
gi|115527096|ref|NM_006035.3| Homo sapiens CDC42 binding protei... 30.2 2.3
gi|1034651924|ref|XM_017011376.1| PREDICTED: Homo sapiens retic... 30.2 2.3
gi|1034651923|ref|XM_011536192.2| PREDICTED: Homo sapiens retic... 30.2 2.3
gi|974005215|ref|NM_032730.5| Homo sapiens reticulon 4 interact... 30.2 2.3
gi|974005216|ref|NM_001318746.1| Homo sapiens reticulon 4 inter... 30.2 2.3
gi|1034651920|ref|XM_017011375.1| PREDICTED: Homo sapiens retic... 30.2 2.3
gi|1034651922|ref|XR_001743693.1| PREDICTED: Homo sapiens retic... 30.2 2.3
gi|1034559140|ref|XM_011541571.2| PREDICTED: Homo sapiens pepti... 30.2 2.3
gi|1034683236|ref|XR_001732732.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034694584|ref|XR_001757578.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034694585|ref|XR_954751.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034693826|ref|XR_001757162.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034626091|ref|XM_017028147.1| PREDICTED: Homo sapiens RNA b... 28.2 9.2
gi|1034626081|ref|XM_017028142.1| PREDICTED: Homo sapiens RNA b... 28.2 9.2
gi|1034626074|ref|XM_011529111.2| PREDICTED: Homo sapiens RNA b... 28.2 9.2
gi|1034626083|ref|XM_017028143.1| PREDICTED: Homo sapiens RNA b... 28.2 9.2
gi|1034626075|ref|XM_017028139.1| PREDICTED: Homo sapiens RNA b... 28.2 9.2
gi|1020738481|ref|NM_001323423.1| Homo sapiens RNA binding moti... 28.2 9.2
gi|1034626085|ref|XM_017028144.1| PREDICTED: Homo sapiens RNA b... 28.2 9.2
gi|342837694|ref|NR_040723.1| Homo sapiens RNA binding motif pr... 28.2 9.2
gi|1034608368|ref|XM_017026923.1| PREDICTED: Homo sapiens steri... 28.2 9.2
gi|1034593683|ref|XM_011522885.2| PREDICTED: Homo sapiens brain... 28.2 9.2
gi|704000384|ref|NR_126453.1| Homo sapiens IGF1R antisense impr... 28.2 9.2
gi|1034585840|ref|XR_001750038.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034581809|ref|XR_001748890.1| PREDICTED: Homo sapiens leuci... 28.2 9.2
gi|1034581808|ref|XR_944766.2| PREDICTED: Homo sapiens leucine-... 28.2 9.2
gi|1034581807|ref|XR_944765.2| PREDICTED: Homo sapiens leucine-... 28.2 9.2
gi|1034581806|ref|XM_011538825.2| PREDICTED: Homo sapiens leuci... 28.2 9.2
gi|1034581804|ref|XM_011538824.2| PREDICTED: Homo sapiens leuci... 28.2 9.2
gi|1034581805|ref|XR_944764.2| PREDICTED: Homo sapiens leucine-... 28.2 9.2
gi|1034581803|ref|XM_011538823.2| PREDICTED: Homo sapiens leuci... 28.2 9.2
gi|1034581801|ref|XM_017020019.1| PREDICTED: Homo sapiens leuci... 28.2 9.2
gi|1034581799|ref|XM_011538818.2| PREDICTED: Homo sapiens leuci... 28.2 9.2
gi|1034581798|ref|XM_011538817.2| PREDICTED: Homo sapiens leuci... 28.2 9.2
gi|1034581800|ref|XM_011538819.2| PREDICTED: Homo sapiens leuci... 28.2 9.2
gi|120953299|ref|NM_001079910.1| Homo sapiens leucine-rich repe... 28.2 9.2
gi|1034568343|ref|XM_017016279.1| PREDICTED: Homo sapiens ornit... 28.2 9.2
gi|1018443201|ref|NM_001322970.1| Homo sapiens ornithine aminot... 28.2 9.2
gi|1018443169|ref|NM_001322968.1| Homo sapiens ornithine aminot... 28.2 9.2
gi|1018443322|ref|NM_001322967.1| Homo sapiens ornithine aminot... 28.2 9.2
gi|1018443212|ref|NM_001322966.1| Homo sapiens ornithine aminot... 28.2 9.2
gi|1018443203|ref|NM_001322969.1| Homo sapiens ornithine aminot... 28.2 9.2
gi|284507296|ref|NM_000274.3| Homo sapiens ornithine aminotrans... 28.2 9.2
gi|1018443183|ref|NM_001322971.1| Homo sapiens ornithine aminot... 28.2 9.2
gi|1018443195|ref|NM_001322974.1| Homo sapiens ornithine aminot... 28.2 9.2
gi|284507297|ref|NM_001171814.1| Homo sapiens ornithine aminotr... 28.2 9.2
gi|1018443243|ref|NM_001322965.1| Homo sapiens ornithine aminot... 28.2 9.2
gi|1034648577|ref|XM_011535485.2| PREDICTED: Homo sapiens CNKSR... 28.2 9.2
gi|1034649366|ref|XM_011535628.2| PREDICTED: Homo sapiens forkh... 28.2 9.2
gi|1034653297|ref|XR_001744229.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034653298|ref|XR_942733.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034647556|ref|XR_001742745.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|225903415|ref|NM_002093.3| Homo sapiens glycogen synthase ki... 28.2 9.2
gi|225903436|ref|NM_001146156.1| Homo sapiens glycogen synthase... 28.2 9.2
gi|1034632927|ref|XM_006713610.2| PREDICTED: Homo sapiens glyco... 28.2 9.2
gi|1034632928|ref|XM_006713611.2| PREDICTED: Homo sapiens glyco... 28.2 9.2
gi|571330809|ref|NR_110209.1| Homo sapiens uncharacterized LOC1... 28.2 9.2
gi|1034618084|ref|XM_017005403.1| PREDICTED: Homo sapiens ring ... 28.2 9.2
gi|1034618077|ref|XM_017005400.1| PREDICTED: Homo sapiens ring ... 28.2 9.2
gi|1034618075|ref|XM_017005399.1| PREDICTED: Homo sapiens ring ... 28.2 9.2
gi|1034618081|ref|XM_017005402.1| PREDICTED: Homo sapiens ring ... 28.2 9.2
gi|1034558907|ref|XR_001737207.1| PREDICTED: Homo sapiens heter... 28.2 9.2
gi|1034558906|ref|XR_001737206.1| PREDICTED: Homo sapiens heter... 28.2 9.2
gi|1034694947|ref|XR_955200.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034694826|ref|XR_001757715.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|259155320|ref|NR_028502.1| Homo sapiens MIR22 host gene (MIR... 28.2 9.2
gi|1034593380|ref|XM_017022864.1| PREDICTED: Homo sapiens katan... 28.2 9.2
gi|1034593375|ref|XM_017022862.1| PREDICTED: Homo sapiens katan... 28.2 9.2
gi|1034593369|ref|XM_011522810.2| PREDICTED: Homo sapiens katan... 28.2 9.2
gi|630044906|ref|NR_120372.1| Homo sapiens CRTC3 antisense RNA ... 28.2 9.2
gi|662236830|ref|NM_031299.5| Homo sapiens cell division cycle ... 28.2 9.2
gi|662236861|ref|NR_123727.1| Homo sapiens cell division cycle ... 28.2 9.2
gi|662236835|ref|NM_001297604.1| Homo sapiens cell division cyc... 28.2 9.2
gi|662236831|ref|NM_001297602.1| Homo sapiens cell division cyc... 28.2 9.2
gi|662236833|ref|NM_001297603.1| Homo sapiens cell division cyc... 28.2 9.2
gi|1034581728|ref|XR_001748879.1| PREDICTED: Homo sapiens cell ... 28.2 9.2
gi|1034581729|ref|XR_001748880.1| PREDICTED: Homo sapiens cell ... 28.2 9.2
gi|1034581730|ref|XR_001748881.1| PREDICTED: Homo sapiens cell ... 28.2 9.2
gi|1034581727|ref|XR_001748878.1| PREDICTED: Homo sapiens cell ... 28.2 9.2
gi|1034671426|ref|XM_011519055.2| PREDICTED: Homo sapiens nucle... 28.2 9.2
gi|359339004|ref|NM_001253775.1| Homo sapiens cAMP responsive e... 28.2 9.2
gi|359339003|ref|NM_194071.3| Homo sapiens cAMP responsive elem... 28.2 9.2
gi|1034653646|ref|XR_943213.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034653525|ref|XR_001744379.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034645636|ref|XM_017009703.1| PREDICTED: Homo sapiens Rho g... 28.2 9.2
gi|346986272|ref|NM_001244364.1| Homo sapiens Rho guanine nucle... 28.2 9.2
gi|1034645635|ref|XM_005248568.4| PREDICTED: Homo sapiens Rho g... 28.2 9.2
gi|1034645632|ref|XM_011543547.2| PREDICTED: Homo sapiens Rho g... 28.2 9.2
gi|767936274|ref|XM_011543546.1| PREDICTED: Homo sapiens Rho gu... 28.2 9.2
gi|1034645633|ref|XM_017009702.1| PREDICTED: Homo sapiens Rho g... 28.2 9.2
gi|295148069|ref|NM_001177693.1| Homo sapiens Rho guanine nucle... 28.2 9.2
gi|295148072|ref|NM_001080479.2| Homo sapiens Rho guanine nucle... 28.2 9.2
gi|767916341|ref|XM_005246243.2| PREDICTED: Homo sapiens LanC l... 28.2 9.2
gi|212274336|ref|NM_001136574.1| Homo sapiens LanC like 1 (LANC... 28.2 9.2
gi|212276218|ref|NM_006055.2| Homo sapiens LanC like 1 (LANCL1)... 28.2 9.2
gi|212274476|ref|NM_001136575.1| Homo sapiens LanC like 1 (LANC... 28.2 9.2
> gi|166197663|ref|NM_001237.3| Homo sapiens cyclin A2 (CCNA2),
mRNA
Length=2811
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAAAGCAAAC 21
|||||||||||||||||||||
Sbjct 564 GTTCCTCCTTGGAAAGCAAAC 584
> gi|1034630510|ref|XR_001755617.1| PREDICTED: Homo sapiens uncharacterized
LOC107985584 (LOC107985584), transcript variant
X1, ncRNA
Length=1137
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 3 TCCTCCTTGGAAAGCA 18
||||||||||||||||
Sbjct 219 TCCTCCTTGGAAAGCA 204
> gi|589269287|ref|NR_110873.1| Homo sapiens uncharacterized LOC101929555
(LOC101929555), long non-coding RNA
Length=2264
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 6 TCCTTGGAAAGCAAAC 21
||||||||||||||||
Sbjct 610 TCCTTGGAAAGCAAAC 595
> gi|1034563735|ref|XM_017002952.1| PREDICTED: Homo sapiens leucine-rich
repeats and immunoglobulin like domains 2 (LRIG2),
transcript variant X2, mRNA
Length=11245
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CTCCTTGGAAAGCAAA 20
||||||||||||||||
Sbjct 3488 CTCCTTGGAAAGCAAA 3473
> gi|731189666|ref|NM_014813.2| Homo sapiens leucine-rich repeats
and immunoglobulin like domains 2 (LRIG2), transcript variant
1, mRNA
Length=4558
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CTCCTTGGAAAGCAAA 20
||||||||||||||||
Sbjct 3837 CTCCTTGGAAAGCAAA 3822
> gi|917958878|ref|NM_001312686.1| Homo sapiens leucine-rich repeats
and immunoglobulin like domains 2 (LRIG2), transcript
variant 2, mRNA
Length=4670
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CTCCTTGGAAAGCAAA 20
||||||||||||||||
Sbjct 3949 CTCCTTGGAAAGCAAA 3934
> gi|1034563734|ref|XM_005271369.2| PREDICTED: Homo sapiens leucine-rich
repeats and immunoglobulin like domains 2 (LRIG2),
transcript variant X1, mRNA
Length=11273
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CTCCTTGGAAAGCAAA 20
||||||||||||||||
Sbjct 3516 CTCCTTGGAAAGCAAA 3501
> gi|1034588684|ref|XM_005268230.4| PREDICTED: Homo sapiens CDC42
binding protein kinase beta (CDC42BPB), transcript variant
X4, mRNA
Length=4610
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 CCTTGGAAAGCAAAC 21
|||||||||||||||
Sbjct 2779 CCTTGGAAAGCAAAC 2793
> gi|767982066|ref|XM_011537387.1| PREDICTED: Homo sapiens CDC42
binding protein kinase beta (CDC42BPB), transcript variant
X5, mRNA
Length=4782
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 CCTTGGAAAGCAAAC 21
|||||||||||||||
Sbjct 2779 CCTTGGAAAGCAAAC 2793
> gi|530404956|ref|XM_005268227.1| PREDICTED: Homo sapiens CDC42
binding protein kinase beta (CDC42BPB), transcript variant
X1, mRNA
Length=6581
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 CCTTGGAAAGCAAAC 21
|||||||||||||||
Sbjct 2779 CCTTGGAAAGCAAAC 2793
> gi|767982068|ref|XR_943564.1| PREDICTED: Homo sapiens CDC42 binding
protein kinase beta (CDC42BPB), transcript variant X6,
misc_RNA
Length=6397
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 CCTTGGAAAGCAAAC 21
|||||||||||||||
Sbjct 2779 CCTTGGAAAGCAAAC 2793
> gi|530404958|ref|XM_005268228.1| PREDICTED: Homo sapiens CDC42
binding protein kinase beta (CDC42BPB), transcript variant
X2, mRNA
Length=6503
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 CCTTGGAAAGCAAAC 21
|||||||||||||||
Sbjct 2779 CCTTGGAAAGCAAAC 2793
> gi|530404960|ref|XM_005268229.1| PREDICTED: Homo sapiens CDC42
binding protein kinase beta (CDC42BPB), transcript variant
X3, mRNA
Length=6452
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 CCTTGGAAAGCAAAC 21
|||||||||||||||
Sbjct 2779 CCTTGGAAAGCAAAC 2793
> gi|115527096|ref|NM_006035.3| Homo sapiens CDC42 binding protein
kinase beta (CDC42BPB), mRNA
Length=6701
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 CCTTGGAAAGCAAAC 21
|||||||||||||||
Sbjct 2949 CCTTGGAAAGCAAAC 2963
> gi|1034651924|ref|XM_017011376.1| PREDICTED: Homo sapiens reticulon
4 interacting protein 1 (RTN4IP1), transcript variant
X4, mRNA
Length=1505
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAAA 15
|||||||||||||||
Sbjct 916 GTTCCTCCTTGGAAA 930
> gi|1034651923|ref|XM_011536192.2| PREDICTED: Homo sapiens reticulon
4 interacting protein 1 (RTN4IP1), transcript variant
X3, mRNA
Length=1777
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAAA 15
|||||||||||||||
Sbjct 1004 GTTCCTCCTTGGAAA 1018
> gi|974005215|ref|NM_032730.5| Homo sapiens reticulon 4 interacting
protein 1 (RTN4IP1), transcript variant 1, mRNA
Length=2893
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAAA 15
|||||||||||||||
Sbjct 916 GTTCCTCCTTGGAAA 930
> gi|974005216|ref|NM_001318746.1| Homo sapiens reticulon 4 interacting
protein 1 (RTN4IP1), transcript variant 2, mRNA
Length=2307
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAAA 15
|||||||||||||||
Sbjct 330 GTTCCTCCTTGGAAA 344
> gi|1034651920|ref|XM_017011375.1| PREDICTED: Homo sapiens reticulon
4 interacting protein 1 (RTN4IP1), transcript variant
X1, mRNA
Length=2526
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAAA 15
|||||||||||||||
Sbjct 916 GTTCCTCCTTGGAAA 930
> gi|1034651922|ref|XR_001743693.1| PREDICTED: Homo sapiens reticulon
4 interacting protein 1 (RTN4IP1), transcript variant
X2, misc_RNA
Length=2926
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAAA 15
|||||||||||||||
Sbjct 1119 GTTCCTCCTTGGAAA 1133
> gi|1034559140|ref|XM_011541571.2| PREDICTED: Homo sapiens peptidyl
arginine deiminase 3 (PADI3), transcript variant X1, mRNA
Length=4800
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAAA 15
|||||||||||||||
Sbjct 1190 GTTCCTCCTTGGAAA 1176
> gi|1034683236|ref|XR_001732732.1| PREDICTED: Homo sapiens uncharacterized
LOC107984583 (LOC107984583), ncRNA
Length=5062
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 563 GTTCCTCCTTGGAA 576
> gi|1034694584|ref|XR_001757578.1| PREDICTED: Homo sapiens uncharacterized
LOC102724168 (LOC102724168), transcript variant
X1, ncRNA
Length=2535
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 CTTGGAAAGCAAAC 21
||||||||||||||
Sbjct 142 CTTGGAAAGCAAAC 155
> gi|1034694585|ref|XR_954751.2| PREDICTED: Homo sapiens uncharacterized
LOC102724168 (LOC102724168), transcript variant X2,
ncRNA
Length=2372
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 CTTGGAAAGCAAAC 21
||||||||||||||
Sbjct 142 CTTGGAAAGCAAAC 155
> gi|1034693826|ref|XR_001757162.1| PREDICTED: Homo sapiens uncharacterized
LOC105379034 (LOC105379034), transcript variant
X3, ncRNA
Length=2067
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 1348 CCTCCTTGGAAAGC 1361
> gi|1034626091|ref|XM_017028147.1| PREDICTED: Homo sapiens RNA
binding motif protein 39 (RBM39), transcript variant X14, mRNA
Length=2774
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 447 CCTCCTTGGAAAGC 460
> gi|1034626081|ref|XM_017028142.1| PREDICTED: Homo sapiens RNA
binding motif protein 39 (RBM39), transcript variant X9, mRNA
Length=5332
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 2927 CCTCCTTGGAAAGC 2940
> gi|1034626074|ref|XM_011529111.2| PREDICTED: Homo sapiens RNA
binding motif protein 39 (RBM39), transcript variant X5, mRNA
Length=4526
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 2103 CCTCCTTGGAAAGC 2116
> gi|1034626083|ref|XM_017028143.1| PREDICTED: Homo sapiens RNA
binding motif protein 39 (RBM39), transcript variant X10, mRNA
Length=4508
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 2103 CCTCCTTGGAAAGC 2116
> gi|1034626075|ref|XM_017028139.1| PREDICTED: Homo sapiens RNA
binding motif protein 39 (RBM39), transcript variant X6, mRNA
Length=3843
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 1420 CCTCCTTGGAAAGC 1433
> gi|1020738481|ref|NM_001323423.1| Homo sapiens RNA binding motif
protein 39 (RBM39), transcript variant 9, mRNA
Length=3026
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 596 CCTCCTTGGAAAGC 609
> gi|1034626085|ref|XM_017028144.1| PREDICTED: Homo sapiens RNA
binding motif protein 39 (RBM39), transcript variant X11, mRNA
Length=3001
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 596 CCTCCTTGGAAAGC 609
> gi|342837694|ref|NR_040723.1| Homo sapiens RNA binding motif
protein 39 (RBM39), transcript variant 6, non-coding RNA
Length=2953
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 523 CCTCCTTGGAAAGC 536
> gi|1034608368|ref|XM_017026923.1| PREDICTED: Homo sapiens sterile
alpha motif domain containing 4B (SAMD4B), transcript variant
X11, mRNA
Length=9588
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 4473 CCTCCTTGGAAAGC 4486
> gi|1034593683|ref|XM_011522885.2| PREDICTED: Homo sapiens brain
expressed, associated with NEDD4, 1 (BEAN1), transcript variant
X3, mRNA
Length=3167
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 421 CCTCCTTGGAAAGC 434
> gi|704000384|ref|NR_126453.1| Homo sapiens IGF1R antisense imprinted
non-protein coding RNA (IRAIN), long non-coding RNA
Length=5359
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 4496 TTCCTCCTTGGAAA 4509
> gi|1034585840|ref|XR_001750038.1| PREDICTED: Homo sapiens uncharacterized
LOC107984583 (LOC107984583), ncRNA
Length=5060
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 561 GTTCCTCCTTGGAA 574
> gi|1034581809|ref|XR_001748890.1| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X11, misc_RNA
Length=2969
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581808|ref|XR_944766.2| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X10, misc_RNA
Length=2997
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581807|ref|XR_944765.2| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X9, misc_RNA
Length=3189
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581806|ref|XM_011538825.2| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X8, mRNA
Length=3348
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581804|ref|XM_011538824.2| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X6, mRNA
Length=4419
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581805|ref|XR_944764.2| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X7, misc_RNA
Length=4595
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581803|ref|XM_011538823.2| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X5, mRNA
Length=4958
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581801|ref|XM_017020019.1| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X4, mRNA
Length=5387
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581799|ref|XM_011538818.2| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X2, mRNA
Length=5873
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581798|ref|XM_011538817.2| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X1, mRNA
Length=6734
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|1034581800|ref|XM_011538819.2| PREDICTED: Homo sapiens leucine-rich
repeats and IQ motif containing 1 (LRRIQ1), transcript
variant X3, mRNA
Length=5448
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 117 TTCCTCCTTGGAAA 130
> gi|120953299|ref|NM_001079910.1| Homo sapiens leucine-rich repeats
and IQ motif containing 1 (LRRIQ1), mRNA
Length=5460
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 174 TTCCTCCTTGGAAA 187
> gi|1034568343|ref|XM_017016279.1| PREDICTED: Homo sapiens ornithine
aminotransferase (OAT), transcript variant X1, mRNA
Length=3887
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 2791 TCCTCCTTGGAAAG 2804
> gi|1018443201|ref|NM_001322970.1| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 8, mRNA
Length=2395
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 1299 TCCTCCTTGGAAAG 1312
> gi|1018443169|ref|NM_001322968.1| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 6, mRNA
Length=2299
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 1203 TCCTCCTTGGAAAG 1216
> gi|1018443322|ref|NM_001322967.1| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 5, mRNA
Length=2212
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 1116 TCCTCCTTGGAAAG 1129
> gi|1018443212|ref|NM_001322966.1| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 4, mRNA
Length=2407
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 1311 TCCTCCTTGGAAAG 1324
> gi|1018443203|ref|NM_001322969.1| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 7, mRNA
Length=2179
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 1083 TCCTCCTTGGAAAG 1096
> gi|284507296|ref|NM_000274.3| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 1, mRNA
Length=2102
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 996 TCCTCCTTGGAAAG 1009
> gi|1018443183|ref|NM_001322971.1| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 9, mRNA
Length=1771
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 675 TCCTCCTTGGAAAG 688
> gi|1018443195|ref|NM_001322974.1| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 10, mRNA
Length=1978
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 882 TCCTCCTTGGAAAG 895
> gi|284507297|ref|NM_001171814.1| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 2, mRNA
Length=1874
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 768 TCCTCCTTGGAAAG 781
> gi|1018443243|ref|NM_001322965.1| Homo sapiens ornithine aminotransferase
(OAT), transcript variant 3, mRNA
Length=2087
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 991 TCCTCCTTGGAAAG 1004
> gi|1034648577|ref|XM_011535485.2| PREDICTED: Homo sapiens CNKSR
family member 3 (CNKSR3), transcript variant X1, mRNA
Length=5711
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 1946 TCCTCCTTGGAAAG 1959
> gi|1034649366|ref|XM_011535628.2| PREDICTED: Homo sapiens forkhead
box O3 (FOXO3), transcript variant X7, mRNA
Length=10871
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 795 GTTCCTCCTTGGAA 808
> gi|1034653297|ref|XR_001744229.1| PREDICTED: Homo sapiens uncharacterized
LOC102724168 (LOC102724168), transcript variant
X1, ncRNA
Length=2535
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 CTTGGAAAGCAAAC 21
||||||||||||||
Sbjct 142 CTTGGAAAGCAAAC 155
> gi|1034653298|ref|XR_942733.2| PREDICTED: Homo sapiens uncharacterized
LOC102724168 (LOC102724168), transcript variant X2,
ncRNA
Length=2372
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 CTTGGAAAGCAAAC 21
||||||||||||||
Sbjct 142 CTTGGAAAGCAAAC 155
> gi|1034647556|ref|XR_001742745.1| PREDICTED: Homo sapiens uncharacterized
LOC105379034 (LOC105379034), transcript variant
X1, ncRNA
Length=2065
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 1348 CCTCCTTGGAAAGC 1361
> gi|225903415|ref|NM_002093.3| Homo sapiens glycogen synthase
kinase 3 beta (GSK3B), transcript variant 1, mRNA
Length=7134
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 TCCTTGGAAAGCAA 19
||||||||||||||
Sbjct 3739 TCCTTGGAAAGCAA 3752
> gi|225903436|ref|NM_001146156.1| Homo sapiens glycogen synthase
kinase 3 beta (GSK3B), transcript variant 2, mRNA
Length=7095
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 TCCTTGGAAAGCAA 19
||||||||||||||
Sbjct 3700 TCCTTGGAAAGCAA 3713
> gi|1034632927|ref|XM_006713610.2| PREDICTED: Homo sapiens glycogen
synthase kinase 3 beta (GSK3B), transcript variant X1,
mRNA
Length=7139
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 TCCTTGGAAAGCAA 19
||||||||||||||
Sbjct 3126 TCCTTGGAAAGCAA 3139
> gi|1034632928|ref|XM_006713611.2| PREDICTED: Homo sapiens glycogen
synthase kinase 3 beta (GSK3B), transcript variant X2,
mRNA
Length=7100
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 TCCTTGGAAAGCAA 19
||||||||||||||
Sbjct 3087 TCCTTGGAAAGCAA 3100
> gi|571330809|ref|NR_110209.1| Homo sapiens uncharacterized LOC101927053
(LOC101927053), long non-coding RNA
Length=2275
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 1748 TCCTCCTTGGAAAG 1761
> gi|1034618084|ref|XM_017005403.1| PREDICTED: Homo sapiens ring
finger protein 144A (RNF144A), transcript variant X11, mRNA
Length=2418
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 1415 CCTCCTTGGAAAGC 1428
> gi|1034618077|ref|XM_017005400.1| PREDICTED: Homo sapiens ring
finger protein 144A (RNF144A), transcript variant X7, mRNA
Length=2483
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 1480 CCTCCTTGGAAAGC 1493
> gi|1034618075|ref|XM_017005399.1| PREDICTED: Homo sapiens ring
finger protein 144A (RNF144A), transcript variant X6, mRNA
Length=3004
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 2001 CCTCCTTGGAAAGC 2014
> gi|1034618081|ref|XM_017005402.1| PREDICTED: Homo sapiens ring
finger protein 144A (RNF144A), transcript variant X9, mRNA
Length=2479
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CCTCCTTGGAAAGC 17
||||||||||||||
Sbjct 1476 CCTCCTTGGAAAGC 1489
> gi|1034558907|ref|XR_001737207.1| PREDICTED: Homo sapiens heterochromatin
protein 1 binding protein 3 (HP1BP3), transcript
variant X12, misc_RNA
Length=3907
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1089 TTCCTCCTTGGAAA 1102
> gi|1034558906|ref|XR_001737206.1| PREDICTED: Homo sapiens heterochromatin
protein 1 binding protein 3 (HP1BP3), transcript
variant X11, misc_RNA
Length=4590
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1772 TTCCTCCTTGGAAA 1785
> gi|1034694947|ref|XR_955200.2| PREDICTED: Homo sapiens uncharacterized
LOC105378102 (LOC105378102), ncRNA
Length=764
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 510 TTCCTCCTTGGAAA 497
> gi|1034694826|ref|XR_001757715.1| PREDICTED: Homo sapiens uncharacterized
LOC107986649 (LOC107986649), misc_RNA
Length=10919
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CTCCTTGGAAAGCA 18
||||||||||||||
Sbjct 2669 CTCCTTGGAAAGCA 2656
> gi|259155320|ref|NR_028502.1| Homo sapiens MIR22 host gene (MIR22HG),
transcript variant 1, long non-coding RNA
Length=2659
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 CCTTGGAAAGCAAA 20
||||||||||||||
Sbjct 1103 CCTTGGAAAGCAAA 1090
> gi|1034593380|ref|XM_017022864.1| PREDICTED: Homo sapiens katanin
regulatory subunit B1 (KATNB1), transcript variant X10,
mRNA
Length=3315
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 459 TCCTCCTTGGAAAG 446
> gi|1034593375|ref|XM_017022862.1| PREDICTED: Homo sapiens katanin
regulatory subunit B1 (KATNB1), transcript variant X7,
mRNA
Length=3366
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 459 TCCTCCTTGGAAAG 446
> gi|1034593369|ref|XM_011522810.2| PREDICTED: Homo sapiens katanin
regulatory subunit B1 (KATNB1), transcript variant X3,
mRNA
Length=3375
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TCCTCCTTGGAAAG 16
||||||||||||||
Sbjct 459 TCCTCCTTGGAAAG 446
> gi|630044906|ref|NR_120372.1| Homo sapiens CRTC3 antisense RNA
1 (CRTC3-AS1), long non-coding RNA
Length=654
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 509 TTCCTCCTTGGAAA 496
> gi|662236830|ref|NM_031299.5| Homo sapiens cell division cycle
associated 3 (CDCA3), transcript variant 1, mRNA
Length=1944
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1364 TTCCTCCTTGGAAA 1351
> gi|662236861|ref|NR_123727.1| Homo sapiens cell division cycle
associated 3 (CDCA3), transcript variant 5, non-coding RNA
Length=1928
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1364 TTCCTCCTTGGAAA 1351
> gi|662236835|ref|NM_001297604.1| Homo sapiens cell division cycle
associated 3 (CDCA3), transcript variant 4, mRNA
Length=1837
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1364 TTCCTCCTTGGAAA 1351
> gi|662236831|ref|NM_001297602.1| Homo sapiens cell division cycle
associated 3 (CDCA3), transcript variant 2, mRNA
Length=1869
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1289 TTCCTCCTTGGAAA 1276
> gi|662236833|ref|NM_001297603.1| Homo sapiens cell division cycle
associated 3 (CDCA3), transcript variant 3, mRNA
Length=1625
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1364 TTCCTCCTTGGAAA 1351
> gi|1034581728|ref|XR_001748879.1| PREDICTED: Homo sapiens cell
division cycle associated 3 (CDCA3), transcript variant X2,
misc_RNA
Length=4105
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1029 TTCCTCCTTGGAAA 1016
> gi|1034581729|ref|XR_001748880.1| PREDICTED: Homo sapiens cell
division cycle associated 3 (CDCA3), transcript variant X3,
misc_RNA
Length=4424
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1364 TTCCTCCTTGGAAA 1351
> gi|1034581730|ref|XR_001748881.1| PREDICTED: Homo sapiens cell
division cycle associated 3 (CDCA3), transcript variant X4,
misc_RNA
Length=4333
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1364 TTCCTCCTTGGAAA 1351
> gi|1034581727|ref|XR_001748878.1| PREDICTED: Homo sapiens cell
division cycle associated 3 (CDCA3), transcript variant X1,
misc_RNA
Length=4701
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 1364 TTCCTCCTTGGAAA 1351
> gi|1034671426|ref|XM_011519055.2| PREDICTED: Homo sapiens nucleoporin
214kDa (NUP214), transcript variant X7, mRNA
Length=6471
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 5925 GTTCCTCCTTGGAA 5912
> gi|359339004|ref|NM_001253775.1| Homo sapiens cAMP responsive
element binding protein 3-like 2 (CREB3L2), transcript variant
2, mRNA
Length=1175
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 8 CTTGGAAAGCAAAC 21
||||||||||||||
Sbjct 265 CTTGGAAAGCAAAC 252
> gi|359339003|ref|NM_194071.3| Homo sapiens cAMP responsive element
binding protein 3-like 2 (CREB3L2), transcript variant
1, mRNA
Length=7471
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 8 CTTGGAAAGCAAAC 21
||||||||||||||
Sbjct 265 CTTGGAAAGCAAAC 252
> gi|1034653646|ref|XR_943213.2| PREDICTED: Homo sapiens uncharacterized
LOC105378102 (LOC105378102), ncRNA
Length=764
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TTCCTCCTTGGAAA 15
||||||||||||||
Sbjct 510 TTCCTCCTTGGAAA 497
> gi|1034653525|ref|XR_001744379.1| PREDICTED: Homo sapiens uncharacterized
LOC107986649 (LOC107986649), misc_RNA
Length=10919
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CTCCTTGGAAAGCA 18
||||||||||||||
Sbjct 2669 CTCCTTGGAAAGCA 2656
> gi|1034645636|ref|XM_017009703.1| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 28 (ARHGEF28), transcript
variant X5, mRNA
Length=5090
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 2440 GTTCCTCCTTGGAA 2427
> gi|346986272|ref|NM_001244364.1| Homo sapiens Rho guanine nucleotide
exchange factor 28 (ARHGEF28), transcript variant 3,
mRNA
Length=5247
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 2658 GTTCCTCCTTGGAA 2645
> gi|1034645635|ref|XM_005248568.4| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 28 (ARHGEF28), transcript
variant X4, mRNA
Length=6789
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 4139 GTTCCTCCTTGGAA 4126
> gi|1034645632|ref|XM_011543547.2| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 28 (ARHGEF28), transcript
variant X2, mRNA
Length=6586
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 3936 GTTCCTCCTTGGAA 3923
> gi|767936274|ref|XM_011543546.1| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 28 (ARHGEF28), transcript
variant X1, mRNA
Length=6359
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 3709 GTTCCTCCTTGGAA 3696
> gi|1034645633|ref|XM_017009702.1| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 28 (ARHGEF28), transcript
variant X3, mRNA
Length=6037
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 3387 GTTCCTCCTTGGAA 3374
> gi|295148069|ref|NM_001177693.1| Homo sapiens Rho guanine nucleotide
exchange factor 28 (ARHGEF28), transcript variant 2,
mRNA
Length=6291
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 3702 GTTCCTCCTTGGAA 3689
> gi|295148072|ref|NM_001080479.2| Homo sapiens Rho guanine nucleotide
exchange factor 28 (ARHGEF28), transcript variant 1,
mRNA
Length=6369
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTTCCTCCTTGGAA 14
||||||||||||||
Sbjct 3702 GTTCCTCCTTGGAA 3689
> gi|767916341|ref|XM_005246243.2| PREDICTED: Homo sapiens LanC
like 1 (LANCL1), transcript variant X1, mRNA
Length=4621
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TCCTTGGAAAGCAA 19
||||||||||||||
Sbjct 1471 TCCTTGGAAAGCAA 1458
> gi|212274336|ref|NM_001136574.1| Homo sapiens LanC like 1 (LANCL1),
transcript variant 2, mRNA
Length=4531
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TCCTTGGAAAGCAA 19
||||||||||||||
Sbjct 1361 TCCTTGGAAAGCAA 1348
> gi|212276218|ref|NM_006055.2| Homo sapiens LanC like 1 (LANCL1),
transcript variant 1, mRNA
Length=4620
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TCCTTGGAAAGCAA 19
||||||||||||||
Sbjct 1450 TCCTTGGAAAGCAA 1437
> gi|212274476|ref|NM_001136575.1| Homo sapiens LanC like 1 (LANCL1),
transcript variant 3, mRNA
Length=4526
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TCCTTGGAAAGCAA 19
||||||||||||||
Sbjct 1356 TCCTTGGAAAGCAA 1343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2