BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GTGGACATCCGCAAAGAC (evalue = 10)
Length=18
Score E
Sequences producing significant alignments: (Bits) Value
gi|582015222|ref|NR_110456.1| Homo sapiens KDM5C adjacent non-c... 36.2 0.023
gi|1034689602|ref|XM_017012144.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034689604|ref|XM_017012145.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034689606|ref|XM_017012146.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|316659408|ref|NM_001199954.1| Homo sapiens actin gamma 1 (AC... 36.2 0.023
gi|316659407|ref|NM_001614.3| Homo sapiens actin gamma 1 (ACTG1... 36.2 0.023
gi|316659410|ref|NR_037688.1| Homo sapiens actin gamma 1 (ACTG1... 36.2 0.023
gi|168480144|ref|NM_001101.3| Homo sapiens actin, beta (ACTB), ... 36.2 0.023
gi|1034614130|ref|XM_017004160.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|134133225|ref|NM_001083538.1| Homo sapiens POTE ankyrin doma... 36.2 0.023
gi|1034614129|ref|XM_011511216.2| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034614127|ref|XM_017004159.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034614132|ref|XM_017004161.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034616020|ref|XM_017004743.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034616018|ref|XM_017004742.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|459352729|ref|NM_001277083.1| Homo sapiens POTE ankyrin doma... 36.2 0.023
gi|1034616015|ref|XM_011511683.2| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034616016|ref|XM_017004741.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|475808426|ref|NM_001277406.1| Homo sapiens POTE ankyrin doma... 36.2 0.023
gi|1034615986|ref|XM_017004734.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034615984|ref|XM_017004733.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034615981|ref|XM_011511670.2| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034615982|ref|XM_017004732.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034615988|ref|XM_017004735.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034616317|ref|XM_017004835.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034616315|ref|XM_017004834.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|1034616313|ref|XM_017004833.1| PREDICTED: Homo sapiens POTE ... 36.2 0.023
gi|256222517|ref|NM_001099771.2| Homo sapiens POTE ankyrin doma... 36.2 0.023
gi|219802466|ref|NR_024438.2| Homo sapiens actin gamma 1 pseudo... 36.2 0.023
gi|768017641|ref|XM_011528913.1| PREDICTED: Homo sapiens sulfat... 30.2 1.4
gi|1034625457|ref|XM_017027955.1| PREDICTED: Homo sapiens sulfa... 30.2 1.4
gi|299890836|ref|NR_033926.1| Homo sapiens actin gamma 1 pseudo... 30.2 1.4
gi|1034594126|ref|XR_001751878.1| PREDICTED: Homo sapiens mahog... 28.2 5.5
gi|1034594127|ref|XR_001751879.1| PREDICTED: Homo sapiens mahog... 28.2 5.5
gi|1034594119|ref|XM_017023091.1| PREDICTED: Homo sapiens mahog... 28.2 5.5
gi|767987083|ref|XM_005255221.3| PREDICTED: Homo sapiens mahogu... 28.2 5.5
gi|767987080|ref|XM_005255220.3| PREDICTED: Homo sapiens mahogu... 28.2 5.5
gi|1034594121|ref|XM_017023092.1| PREDICTED: Homo sapiens mahog... 28.2 5.5
gi|767987079|ref|XM_005255219.3| PREDICTED: Homo sapiens mahogu... 28.2 5.5
gi|456367266|ref|NR_102267.1| Homo sapiens mahogunin ring finge... 28.2 5.5
gi|334883177|ref|NM_001142289.2| Homo sapiens mahogunin ring fi... 28.2 5.5
gi|334883181|ref|NM_001142291.2| Homo sapiens mahogunin ring fi... 28.2 5.5
gi|334883176|ref|NM_015246.3| Homo sapiens mahogunin ring finge... 28.2 5.5
gi|334883179|ref|NM_001142290.2| Homo sapiens mahogunin ring fi... 28.2 5.5
gi|530407837|ref|XM_005255218.1| PREDICTED: Homo sapiens mahogu... 28.2 5.5
gi|530407835|ref|XM_005255217.1| PREDICTED: Homo sapiens mahogu... 28.2 5.5
gi|1034594123|ref|XM_017023093.1| PREDICTED: Homo sapiens mahog... 28.2 5.5
gi|767987081|ref|XM_011522441.1| PREDICTED: Homo sapiens mahogu... 28.2 5.5
gi|224282146|ref|NM_001145442.1| Homo sapiens POTE ankyrin doma... 28.2 5.5
gi|51093829|ref|NM_001003398.1| Homo sapiens BICD cargo adaptor... 28.2 5.5
gi|51039801|ref|NM_001714.2| Homo sapiens BICD cargo adaptor 1 ... 28.2 5.5
gi|767972311|ref|XM_005253466.2| PREDICTED: Homo sapiens BICD c... 28.2 5.5
gi|1034581084|ref|XM_005253465.3| PREDICTED: Homo sapiens BICD ... 28.2 5.5
gi|1034581081|ref|XM_011520815.2| PREDICTED: Homo sapiens BICD ... 28.2 5.5
gi|767972300|ref|XM_011520813.1| PREDICTED: Homo sapiens BICD c... 28.2 5.5
gi|1034581085|ref|XM_006719134.3| PREDICTED: Homo sapiens BICD ... 28.2 5.5
gi|1034581083|ref|XR_242898.3| PREDICTED: Homo sapiens BICD car... 28.2 5.5
gi|1034581082|ref|XM_011520816.2| PREDICTED: Homo sapiens BICD ... 28.2 5.5
gi|1034581077|ref|XM_011520812.2| PREDICTED: Homo sapiens BICD ... 28.2 5.5
gi|1034581080|ref|XM_011520814.2| PREDICTED: Homo sapiens BICD ... 28.2 5.5
gi|1034581078|ref|XM_017019797.1| PREDICTED: Homo sapiens BICD ... 28.2 5.5
gi|557440851|ref|NM_001286576.1| Homo sapiens armadillo repeat ... 28.2 5.5
gi|557440859|ref|NM_001286574.1| Homo sapiens armadillo repeat ... 28.2 5.5
gi|557440866|ref|NM_145028.4| Homo sapiens armadillo repeat con... 28.2 5.5
gi|1034649018|ref|XM_011514382.2| PREDICTED: Homo sapiens armad... 28.2 5.5
gi|1034649015|ref|XM_017010435.1| PREDICTED: Homo sapiens armad... 28.2 5.5
gi|767933069|ref|XM_005263352.3| PREDICTED: Homo sapiens tRNA m... 28.2 5.5
gi|767933068|ref|XM_006714417.2| PREDICTED: Homo sapiens tRNA m... 28.2 5.5
gi|197927259|ref|NM_152292.4| Homo sapiens tRNA methyltransfera... 28.2 5.5
gi|698043595|ref|NM_001134665.2| Homo sapiens tRNA methyltransf... 28.2 5.5
gi|698043592|ref|NM_001134666.2| Homo sapiens tRNA methyltransf... 28.2 5.5
> gi|582015222|ref|NR_110456.1| Homo sapiens KDM5C adjacent non-coding
transcript (KANTR), long non-coding RNA
Length=2428
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1416 GTGGACATCCGCAAAGAC 1399
> gi|1034689602|ref|XM_017012144.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X6, mRNA
Length=2583
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1743 GTGGACATCCGCAAAGAC 1760
> gi|1034689604|ref|XM_017012145.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X4, mRNA
Length=2672
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1832 GTGGACATCCGCAAAGAC 1849
> gi|1034689606|ref|XM_017012146.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X5, mRNA
Length=1584
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 744 GTGGACATCCGCAAAGAC 761
> gi|316659408|ref|NM_001199954.1| Homo sapiens actin gamma 1 (ACTG1),
transcript variant 1, mRNA
Length=2123
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1117 GTGGACATCCGCAAAGAC 1134
> gi|316659407|ref|NM_001614.3| Homo sapiens actin gamma 1 (ACTG1),
transcript variant 2, mRNA
Length=2004
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 998 GTGGACATCCGCAAAGAC 1015
> gi|316659410|ref|NR_037688.1| Homo sapiens actin gamma 1 (ACTG1),
transcript variant 3, non-coding RNA
Length=1855
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 998 GTGGACATCCGCAAAGAC 1015
> gi|168480144|ref|NM_001101.3| Homo sapiens actin, beta (ACTB),
mRNA
Length=1852
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 943 GTGGACATCCGCAAAGAC 960
> gi|1034614130|ref|XM_017004160.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X3, mRNA
Length=2574
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1734 GTGGACATCCGCAAAGAC 1751
> gi|134133225|ref|NM_001083538.1| Homo sapiens POTE ankyrin domain
family member E (POTEE), mRNA
Length=3440
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 3011 GTGGACATCCGCAAAGAC 3028
> gi|1034614129|ref|XM_011511216.2| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X2, mRNA
Length=3575
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 2735 GTGGACATCCGCAAAGAC 2752
> gi|1034614127|ref|XM_017004159.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X1, mRNA
Length=3606
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 2766 GTGGACATCCGCAAAGAC 2783
> gi|1034614132|ref|XM_017004161.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X4, mRNA
Length=4288
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 3448 GTGGACATCCGCAAAGAC 3465
> gi|1034616020|ref|XM_017004743.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X4, mRNA
Length=2628
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1788 GTGGACATCCGCAAAGAC 1805
> gi|1034616018|ref|XM_017004742.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X3, mRNA
Length=2696
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1856 GTGGACATCCGCAAAGAC 1873
> gi|459352729|ref|NM_001277083.1| Homo sapiens POTE ankyrin domain
family member J (POTEJ), mRNA
Length=3277
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 2848 GTGGACATCCGCAAAGAC 2865
> gi|1034616015|ref|XM_011511683.2| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X1, mRNA
Length=3860
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 3020 GTGGACATCCGCAAAGAC 3037
> gi|1034616016|ref|XM_017004741.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X2, mRNA
Length=3833
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 2993 GTGGACATCCGCAAAGAC 3010
> gi|475808426|ref|NM_001277406.1| Homo sapiens POTE ankyrin domain
family member I (POTEI), mRNA
Length=3228
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 2959 GTGGACATCCGCAAAGAC 2976
> gi|1034615986|ref|XM_017004734.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X4, mRNA
Length=2633
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1793 GTGGACATCCGCAAAGAC 1810
> gi|1034615984|ref|XM_017004733.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X3, mRNA
Length=2696
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1856 GTGGACATCCGCAAAGAC 1873
> gi|1034615981|ref|XM_011511670.2| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X1, mRNA
Length=3971
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 3131 GTGGACATCCGCAAAGAC 3148
> gi|1034615982|ref|XM_017004732.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X2, mRNA
Length=3950
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 3110 GTGGACATCCGCAAAGAC 3127
> gi|1034615988|ref|XM_017004735.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X5, mRNA
Length=1593
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 753 GTGGACATCCGCAAAGAC 770
> gi|1034616317|ref|XM_017004835.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member F (POTEF), transcript variant
X3, mRNA
Length=2633
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1793 GTGGACATCCGCAAAGAC 1810
> gi|1034616315|ref|XM_017004834.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member F (POTEF), transcript variant
X2, mRNA
Length=2696
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1856 GTGGACATCCGCAAAGAC 1873
> gi|1034616313|ref|XM_017004833.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member F (POTEF), transcript variant
X1, mRNA
Length=3974
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 3134 GTGGACATCCGCAAAGAC 3151
> gi|256222517|ref|NM_001099771.2| Homo sapiens POTE ankyrin domain
family member F (POTEF), mRNA
Length=4337
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 3359 GTGGACATCCGCAAAGAC 3376
> gi|219802466|ref|NR_024438.2| Homo sapiens actin gamma 1 pseudogene
4 (ACTG1P4), non-coding RNA
Length=1988
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
||||||||||||||||||
Sbjct 1005 GTGGACATCCGCAAAGAC 1022
> gi|768017641|ref|XM_011528913.1| PREDICTED: Homo sapiens sulfatase
2 (SULF2), transcript variant X4, mRNA
Length=3884
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GGACATCCGCAAAGA 17
|||||||||||||||
Sbjct 172 GGACATCCGCAAAGA 186
> gi|1034625457|ref|XM_017027955.1| PREDICTED: Homo sapiens sulfatase
2 (SULF2), transcript variant X7, mRNA
Length=6708
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GGACATCCGCAAAGA 17
|||||||||||||||
Sbjct 177 GGACATCCGCAAAGA 191
> gi|299890836|ref|NR_033926.1| Homo sapiens actin gamma 1 pseudogene
20 (ACTG1P20), non-coding RNA
Length=2652
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGAC 18
|||||||||||||||
Sbjct 1657 GACATCCGCAAAGAC 1671
> gi|1034594126|ref|XR_001751878.1| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X11, misc_RNA
Length=1582
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|1034594127|ref|XR_001751879.1| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X12, misc_RNA
Length=1624
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|1034594119|ref|XM_017023091.1| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X4, mRNA
Length=2911
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|767987083|ref|XM_005255221.3| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X8, mRNA
Length=1823
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|767987080|ref|XM_005255220.3| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X5, mRNA
Length=1889
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|1034594121|ref|XM_017023092.1| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X7, mRNA
Length=1826
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|767987079|ref|XM_005255219.3| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X3, mRNA
Length=1892
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|456367266|ref|NR_102267.1| Homo sapiens mahogunin ring finger
1 (MGRN1), transcript variant 5, non-coding RNA
Length=3758
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|334883177|ref|NM_001142289.2| Homo sapiens mahogunin ring
finger 1 (MGRN1), transcript variant 2, mRNA
Length=3868
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|334883181|ref|NM_001142291.2| Homo sapiens mahogunin ring
finger 1 (MGRN1), transcript variant 4, mRNA
Length=6405
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|334883176|ref|NM_015246.3| Homo sapiens mahogunin ring finger
1 (MGRN1), transcript variant 1, mRNA
Length=3934
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|334883179|ref|NM_001142290.2| Homo sapiens mahogunin ring
finger 1 (MGRN1), transcript variant 3, mRNA
Length=6471
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|530407837|ref|XM_005255218.1| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X2, mRNA
Length=3871
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|530407835|ref|XM_005255217.1| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X1, mRNA
Length=3937
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 403 ACATCCGCAAAGAC 416
> gi|1034594123|ref|XM_017023093.1| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X9, mRNA
Length=1747
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 261 ACATCCGCAAAGAC 274
> gi|767987081|ref|XM_011522441.1| PREDICTED: Homo sapiens mahogunin
ring finger 1 (MGRN1), transcript variant X6, mRNA
Length=3795
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 261 ACATCCGCAAAGAC 274
> gi|224282146|ref|NM_001145442.1| Homo sapiens POTE ankyrin domain
family member M (POTEM), mRNA
Length=6666
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GTGGACATCCGCAAAGAC 18
|||||||||| |||||||
Sbjct 2640 GTGGACATCCACAAAGAC 2657
> gi|51093829|ref|NM_001003398.1| Homo sapiens BICD cargo adaptor
1 (BICD1), transcript variant 2, mRNA
Length=3285
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 1930 GACATCCGCAAAGA 1943
> gi|51039801|ref|NM_001714.2| Homo sapiens BICD cargo adaptor
1 (BICD1), transcript variant 1, mRNA
Length=3589
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 1930 GACATCCGCAAAGA 1943
> gi|767972311|ref|XM_005253466.2| PREDICTED: Homo sapiens BICD
cargo adaptor 1 (BICD1), transcript variant X10, mRNA
Length=3432
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|1034581084|ref|XM_005253465.3| PREDICTED: Homo sapiens BICD
cargo adaptor 1 (BICD1), transcript variant X8, mRNA
Length=6178
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|1034581081|ref|XM_011520815.2| PREDICTED: Homo sapiens BICD
cargo adaptor 1 (BICD1), transcript variant X5, mRNA
Length=4901
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|767972300|ref|XM_011520813.1| PREDICTED: Homo sapiens BICD
cargo adaptor 1 (BICD1), transcript variant X3, mRNA
Length=3763
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|1034581085|ref|XM_006719134.3| PREDICTED: Homo sapiens BICD
cargo adaptor 1 (BICD1), transcript variant X9, mRNA
Length=3463
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|1034581083|ref|XR_242898.3| PREDICTED: Homo sapiens BICD cargo
adaptor 1 (BICD1), transcript variant X7, misc_RNA
Length=5543
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|1034581082|ref|XM_011520816.2| PREDICTED: Homo sapiens BICD
cargo adaptor 1 (BICD1), transcript variant X6, mRNA
Length=9240
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|1034581077|ref|XM_011520812.2| PREDICTED: Homo sapiens BICD
cargo adaptor 1 (BICD1), transcript variant X1, mRNA
Length=9458
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|1034581080|ref|XM_011520814.2| PREDICTED: Homo sapiens BICD
cargo adaptor 1 (BICD1), transcript variant X4, mRNA
Length=9544
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|1034581078|ref|XM_017019797.1| PREDICTED: Homo sapiens BICD
cargo adaptor 1 (BICD1), transcript variant X2, mRNA
Length=9543
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GACATCCGCAAAGA 17
||||||||||||||
Sbjct 2445 GACATCCGCAAAGA 2458
> gi|557440851|ref|NM_001286576.1| Homo sapiens armadillo repeat
containing 12 (ARMC12), transcript variant 3, mRNA
Length=1120
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TGGACATCCGCAAA 15
||||||||||||||
Sbjct 112 TGGACATCCGCAAA 125
> gi|557440859|ref|NM_001286574.1| Homo sapiens armadillo repeat
containing 12 (ARMC12), transcript variant 2, mRNA
Length=1150
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TGGACATCCGCAAA 15
||||||||||||||
Sbjct 112 TGGACATCCGCAAA 125
> gi|557440866|ref|NM_145028.4| Homo sapiens armadillo repeat containing
12 (ARMC12), transcript variant 1, mRNA
Length=1231
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TGGACATCCGCAAA 15
||||||||||||||
Sbjct 112 TGGACATCCGCAAA 125
> gi|1034649018|ref|XM_011514382.2| PREDICTED: Homo sapiens armadillo
repeat containing 12 (ARMC12), transcript variant X3,
mRNA
Length=1223
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TGGACATCCGCAAA 15
||||||||||||||
Sbjct 164 TGGACATCCGCAAA 177
> gi|1034649015|ref|XM_017010435.1| PREDICTED: Homo sapiens armadillo
repeat containing 12 (ARMC12), transcript variant X1,
mRNA
Length=2698
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 TGGACATCCGCAAA 15
||||||||||||||
Sbjct 1586 TGGACATCCGCAAA 1599
> gi|767933069|ref|XM_005263352.3| PREDICTED: Homo sapiens tRNA
methyltransferase 10A (TRMT10A), transcript variant X2, mRNA
Length=3546
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 3187 ACATCCGCAAAGAC 3200
> gi|767933068|ref|XM_006714417.2| PREDICTED: Homo sapiens tRNA
methyltransferase 10A (TRMT10A), transcript variant X1, mRNA
Length=3588
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 3229 ACATCCGCAAAGAC 3242
> gi|197927259|ref|NM_152292.4| Homo sapiens tRNA methyltransferase
10A (TRMT10A), transcript variant 1, mRNA
Length=3722
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 3353 ACATCCGCAAAGAC 3366
> gi|698043595|ref|NM_001134665.2| Homo sapiens tRNA methyltransferase
10A (TRMT10A), transcript variant 2, mRNA
Length=3577
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 3208 ACATCCGCAAAGAC 3221
> gi|698043592|ref|NM_001134666.2| Homo sapiens tRNA methyltransferase
10A (TRMT10A), transcript variant 3, mRNA
Length=3566
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ACATCCGCAAAGAC 18
||||||||||||||
Sbjct 3197 ACATCCGCAAAGAC 3210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1753414533
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2