BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GTGCTTGGCTGAGTTCACAA (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|115529279|ref|NR_002944.2| Homo sapiens heterogeneous nuclea... 40.1 0.002
gi|58761497|ref|NM_001011725.1| Homo sapiens heterogeneous nucl... 40.1 0.002
gi|58761495|ref|NM_001011724.1| Homo sapiens heterogeneous nucl... 40.1 0.002
gi|1034579321|ref|XM_017019251.1| PREDICTED: Homo sapiens heter... 40.1 0.002
gi|994318938|ref|NM_002136.3| Homo sapiens heterogeneous nuclea... 40.1 0.002
gi|994318937|ref|NM_031157.3| Homo sapiens heterogeneous nuclea... 40.1 0.002
gi|1034674303|ref|XM_011530954.2| PREDICTED: Homo sapiens XK re... 36.2 0.030
gi|1034699225|ref|XR_001736706.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034699223|ref|XR_001736704.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034699224|ref|XR_001736705.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034686048|ref|XR_001734096.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034675920|ref|XR_001755852.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034675918|ref|XR_001755850.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034675919|ref|XR_001755851.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034597306|ref|XR_001752267.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034698285|ref|XR_001759394.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034688010|ref|XR_921863.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034672565|ref|XR_001746662.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|817473756|ref|NM_001308394.1| Homo sapiens C-type lectin dom... 28.2 7.3
gi|1016841199|ref|NM_001322427.1| Homo sapiens calcium responsi... 28.2 7.3
gi|1034618635|ref|XR_922805.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|166064055|ref|NM_001113536.1| Homo sapiens folate receptor b... 28.2 7.3
gi|166064051|ref|NM_001113534.1| Homo sapiens folate receptor b... 28.2 7.3
gi|166064053|ref|NM_001113535.1| Homo sapiens folate receptor b... 28.2 7.3
gi|166064049|ref|NM_000803.4| Homo sapiens folate receptor beta... 28.2 7.3
gi|170014702|ref|NM_003023.4| Homo sapiens SH3 domain binding p... 28.2 7.3
gi|224994220|ref|NM_001145856.1| Homo sapiens SH3 domain bindin... 28.2 7.3
gi|224994218|ref|NM_001145855.1| Homo sapiens SH3 domain bindin... 28.2 7.3
gi|170014704|ref|NM_001122681.1| Homo sapiens SH3 domain bindin... 28.2 7.3
> gi|115529279|ref|NR_002944.2| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 pseudogene 10 (HNRNPA1P10), non-coding
RNA
Length=1354
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GTGCTTGGCTGAGTTCACAA 20
||||||||||||||||||||
Sbjct 1110 GTGCTTGGCTGAGTTCACAA 1091
> gi|58761497|ref|NM_001011725.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1-like 2 (HNRNPA1L2), transcript variant
2, mRNA
Length=2224
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GTGCTTGGCTGAGTTCACAA 20
||||||||||||||||||||
Sbjct 1984 GTGCTTGGCTGAGTTCACAA 1965
> gi|58761495|ref|NM_001011724.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1-like 2 (HNRNPA1L2), transcript variant
1, mRNA
Length=2365
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GTGCTTGGCTGAGTTCACAA 20
||||||||||||||||||||
Sbjct 2125 GTGCTTGGCTGAGTTCACAA 2106
> gi|1034579321|ref|XM_017019251.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript
variant X3, mRNA
Length=1702
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GTGCTTGGCTGAGTTCACAA 20
||||||||||||||||||||
Sbjct 1089 GTGCTTGGCTGAGTTCACAA 1070
> gi|994318938|ref|NM_002136.3| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 1, mRNA
Length=1799
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GTGCTTGGCTGAGTTCACAA 20
||||||||||||||||||||
Sbjct 1170 GTGCTTGGCTGAGTTCACAA 1151
> gi|994318937|ref|NM_031157.3| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 2, mRNA
Length=1955
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GTGCTTGGCTGAGTTCACAA 20
||||||||||||||||||||
Sbjct 1326 GTGCTTGGCTGAGTTCACAA 1307
> gi|1034674303|ref|XM_011530954.2| PREDICTED: Homo sapiens XK
related, X-linked (XKRX), transcript variant X1, mRNA
Length=4149
Score = 36.2 bits (18), Expect = 0.030
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 GTGCTTGGCTGAGTTCAC 18
||||||||||||||||||
Sbjct 3527 GTGCTTGGCTGAGTTCAC 3510
> gi|1034699225|ref|XR_001736706.1| PREDICTED: Homo sapiens uncharacterized
LOC105373204 (LOC105373204), transcript variant
X3, ncRNA
Length=13247
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GCTTGGCTGAGTTCA 17
|||||||||||||||
Sbjct 3630 GCTTGGCTGAGTTCA 3644
> gi|1034699223|ref|XR_001736704.1| PREDICTED: Homo sapiens uncharacterized
LOC105373204 (LOC105373204), transcript variant
X1, ncRNA
Length=13678
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GCTTGGCTGAGTTCA 17
|||||||||||||||
Sbjct 4061 GCTTGGCTGAGTTCA 4075
> gi|1034699224|ref|XR_001736705.1| PREDICTED: Homo sapiens uncharacterized
LOC105373204 (LOC105373204), transcript variant
X2, ncRNA
Length=13349
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GCTTGGCTGAGTTCA 17
|||||||||||||||
Sbjct 3732 GCTTGGCTGAGTTCA 3746
> gi|1034686048|ref|XR_001734096.1| PREDICTED: Homo sapiens uncharacterized
LOC107984897 (LOC107984897), ncRNA
Length=867
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 5 TTGGCTGAGTTCACA 19
|||||||||||||||
Sbjct 278 TTGGCTGAGTTCACA 292
> gi|1034675920|ref|XR_001755852.1| PREDICTED: Homo sapiens uncharacterized
LOC105373204 (LOC105373204), transcript variant
X3, ncRNA
Length=13247
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GCTTGGCTGAGTTCA 17
|||||||||||||||
Sbjct 3630 GCTTGGCTGAGTTCA 3644
> gi|1034675918|ref|XR_001755850.1| PREDICTED: Homo sapiens uncharacterized
LOC105373204 (LOC105373204), transcript variant
X1, ncRNA
Length=13678
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GCTTGGCTGAGTTCA 17
|||||||||||||||
Sbjct 4061 GCTTGGCTGAGTTCA 4075
> gi|1034675919|ref|XR_001755851.1| PREDICTED: Homo sapiens uncharacterized
LOC105373204 (LOC105373204), transcript variant
X2, ncRNA
Length=13349
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GCTTGGCTGAGTTCA 17
|||||||||||||||
Sbjct 3732 GCTTGGCTGAGTTCA 3746
> gi|1034597306|ref|XR_001752267.1| PREDICTED: Homo sapiens uncharacterized
LOC107984897 (LOC107984897), ncRNA
Length=870
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 5 TTGGCTGAGTTCACA 19
|||||||||||||||
Sbjct 278 TTGGCTGAGTTCACA 292
> gi|1034698285|ref|XR_001759394.1| PREDICTED: Homo sapiens uncharacterized
LOC105376030 (LOC105376030), transcript variant
X2, ncRNA
Length=2973
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TGCTTGGCTGAGTT 15
||||||||||||||
Sbjct 1274 TGCTTGGCTGAGTT 1261
> gi|1034688010|ref|XR_921863.2| PREDICTED: Homo sapiens uncharacterized
LOC105373431 (LOC105373431), ncRNA
Length=1049
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CTTGGCTGAGTTCA 17
||||||||||||||
Sbjct 428 CTTGGCTGAGTTCA 415
> gi|1034672565|ref|XR_001746662.1| PREDICTED: Homo sapiens uncharacterized
LOC105376030 (LOC105376030), transcript variant
X2, ncRNA
Length=2973
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TGCTTGGCTGAGTT 15
||||||||||||||
Sbjct 1274 TGCTTGGCTGAGTT 1261
> gi|817473756|ref|NM_001308394.1| Homo sapiens C-type lectin domain
family 3 member B (CLEC3B), transcript variant 2, mRNA
Length=772
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GTGCTTGGCTGAGT 14
||||||||||||||
Sbjct 104 GTGCTTGGCTGAGT 91
> gi|1016841199|ref|NM_001322427.1| Homo sapiens calcium responsive
transcription factor (CARF), transcript variant 6, mRNA
Length=6786
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 TGCTTGGCTGAGTT 15
||||||||||||||
Sbjct 6122 TGCTTGGCTGAGTT 6109
> gi|1034618635|ref|XR_922805.2| PREDICTED: Homo sapiens uncharacterized
LOC105373431 (LOC105373431), ncRNA
Length=1049
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CTTGGCTGAGTTCA 17
||||||||||||||
Sbjct 428 CTTGGCTGAGTTCA 415
> gi|166064055|ref|NM_001113536.1| Homo sapiens folate receptor
beta (FOLR2), transcript variant 4, mRNA
Length=1127
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CTTGGCTGAGTTCA 17
||||||||||||||
Sbjct 917 CTTGGCTGAGTTCA 930
> gi|166064051|ref|NM_001113534.1| Homo sapiens folate receptor
beta (FOLR2), transcript variant 2, mRNA
Length=1139
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CTTGGCTGAGTTCA 17
||||||||||||||
Sbjct 929 CTTGGCTGAGTTCA 942
> gi|166064053|ref|NM_001113535.1| Homo sapiens folate receptor
beta (FOLR2), transcript variant 3, mRNA
Length=1133
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CTTGGCTGAGTTCA 17
||||||||||||||
Sbjct 923 CTTGGCTGAGTTCA 936
> gi|166064049|ref|NM_000803.4| Homo sapiens folate receptor beta
(FOLR2), transcript variant 1, mRNA
Length=1145
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 CTTGGCTGAGTTCA 17
||||||||||||||
Sbjct 935 CTTGGCTGAGTTCA 948
> gi|170014702|ref|NM_003023.4| Homo sapiens SH3 domain binding
protein 2 (SH3BP2), transcript variant 1, mRNA
Length=9209
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 TGGCTGAGTTCACA 19
||||||||||||||
Sbjct 2889 TGGCTGAGTTCACA 2902
> gi|224994220|ref|NM_001145856.1| Homo sapiens SH3 domain binding
protein 2 (SH3BP2), transcript variant 3, mRNA
Length=9158
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 TGGCTGAGTTCACA 19
||||||||||||||
Sbjct 2838 TGGCTGAGTTCACA 2851
> gi|224994218|ref|NM_001145855.1| Homo sapiens SH3 domain binding
protein 2 (SH3BP2), transcript variant 4, mRNA
Length=9211
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 TGGCTGAGTTCACA 19
||||||||||||||
Sbjct 2891 TGGCTGAGTTCACA 2904
> gi|170014704|ref|NM_001122681.1| Homo sapiens SH3 domain binding
protein 2 (SH3BP2), transcript variant 2, mRNA
Length=9068
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 TGGCTGAGTTCACA 19
||||||||||||||
Sbjct 2748 TGGCTGAGTTCACA 2761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2