BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GTGCAACTCAAAGACCTGGAACTCGAGTTCCAGGTCTTTGAGTTGCACTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|71772358|ref|NM_001019.4| Homo sapiens ribosomal protein S15... 42.1 0.004
gi|71772414|ref|NM_001030009.1| Homo sapiens ribosomal protein ... 42.1 0.004
gi|1034614747|ref|XM_017004373.1| PREDICTED: Homo sapiens syntr... 34.2 1.1
gi|1034614728|ref|XM_017004364.1| PREDICTED: Homo sapiens syntr... 34.2 1.1
gi|1034614736|ref|XM_011510366.2| PREDICTED: Homo sapiens syntr... 34.2 1.1
gi|1034614726|ref|XM_017004363.1| PREDICTED: Homo sapiens syntr... 34.2 1.1
gi|1034614722|ref|XM_017004361.1| PREDICTED: Homo sapiens syntr... 34.2 1.1
gi|1034614734|ref|XM_017004367.1| PREDICTED: Homo sapiens syntr... 34.2 1.1
gi|259155292|ref|NM_018968.3| Homo sapiens syntrophin gamma 2 (... 34.2 1.1
> gi|71772358|ref|NM_001019.4| Homo sapiens ribosomal protein S15a
(RPS15A), transcript variant 2, mRNA
Length=554
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGCAACTCAAAGACCTGGAA 21
|||||||||||||||||||||
Sbjct 337 GTGCAACTCAAAGACCTGGAA 357
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCCAGGTCTTTGAGTTGCAC 48
|||||||||||||||||||||
Sbjct 357 TTCCAGGTCTTTGAGTTGCAC 337
> gi|71772414|ref|NM_001030009.1| Homo sapiens ribosomal protein
S15a (RPS15A), transcript variant 1, mRNA
Length=488
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGCAACTCAAAGACCTGGAA 21
|||||||||||||||||||||
Sbjct 271 GTGCAACTCAAAGACCTGGAA 291
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCCAGGTCTTTGAGTTGCAC 48
|||||||||||||||||||||
Sbjct 291 TTCCAGGTCTTTGAGTTGCAC 271
> gi|1034614747|ref|XM_017004373.1| PREDICTED: Homo sapiens syntrophin
gamma 2 (SNTG2), transcript variant X14, mRNA
Length=2475
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 18 GGAACTCGAGTTCCAGG 34
|||||||||||||||||
Sbjct 2221 GGAACTCGAGTTCCAGG 2237
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 15 CCTGGAACTCGAGTTCC 31
|||||||||||||||||
Sbjct 2237 CCTGGAACTCGAGTTCC 2221
> gi|1034614728|ref|XM_017004364.1| PREDICTED: Homo sapiens syntrophin
gamma 2 (SNTG2), transcript variant X4, mRNA
Length=5161
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 18 GGAACTCGAGTTCCAGG 34
|||||||||||||||||
Sbjct 4907 GGAACTCGAGTTCCAGG 4923
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 15 CCTGGAACTCGAGTTCC 31
|||||||||||||||||
Sbjct 4923 CCTGGAACTCGAGTTCC 4907
> gi|1034614736|ref|XM_011510366.2| PREDICTED: Homo sapiens syntrophin
gamma 2 (SNTG2), transcript variant X8, mRNA
Length=1908
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 18 GGAACTCGAGTTCCAGG 34
|||||||||||||||||
Sbjct 1654 GGAACTCGAGTTCCAGG 1670
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 15 CCTGGAACTCGAGTTCC 31
|||||||||||||||||
Sbjct 1670 CCTGGAACTCGAGTTCC 1654
> gi|1034614726|ref|XM_017004363.1| PREDICTED: Homo sapiens syntrophin
gamma 2 (SNTG2), transcript variant X3, mRNA
Length=2020
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 18 GGAACTCGAGTTCCAGG 34
|||||||||||||||||
Sbjct 1766 GGAACTCGAGTTCCAGG 1782
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 15 CCTGGAACTCGAGTTCC 31
|||||||||||||||||
Sbjct 1782 CCTGGAACTCGAGTTCC 1766
> gi|1034614722|ref|XM_017004361.1| PREDICTED: Homo sapiens syntrophin
gamma 2 (SNTG2), transcript variant X1, mRNA
Length=2228
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 18 GGAACTCGAGTTCCAGG 34
|||||||||||||||||
Sbjct 1579 GGAACTCGAGTTCCAGG 1595
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 15 CCTGGAACTCGAGTTCC 31
|||||||||||||||||
Sbjct 1595 CCTGGAACTCGAGTTCC 1579
> gi|1034614734|ref|XM_017004367.1| PREDICTED: Homo sapiens syntrophin
gamma 2 (SNTG2), transcript variant X7, mRNA
Length=1909
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 18 GGAACTCGAGTTCCAGG 34
|||||||||||||||||
Sbjct 1655 GGAACTCGAGTTCCAGG 1671
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 15 CCTGGAACTCGAGTTCC 31
|||||||||||||||||
Sbjct 1671 CCTGGAACTCGAGTTCC 1655
> gi|259155292|ref|NM_018968.3| Homo sapiens syntrophin gamma 2
(SNTG2), mRNA
Length=1905
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 18 GGAACTCGAGTTCCAGG 34
|||||||||||||||||
Sbjct 1617 GGAACTCGAGTTCCAGG 1633
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 15 CCTGGAACTCGAGTTCC 31
|||||||||||||||||
Sbjct 1633 CCTGGAACTCGAGTTCC 1617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2