BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GTGAATCCAGAGATAAGTTTACTCGAGTAAACTTATCTCTGGATTCACTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|92859700|ref|NM_004999.3| Homo sapiens myosin VI (MYO6), tra... 42.1 0.004
gi|1034650383|ref|XM_005248726.3| PREDICTED: Homo sapiens myosi... 42.1 0.004
gi|1034650381|ref|XM_017010899.1| PREDICTED: Homo sapiens myosi... 42.1 0.004
gi|1034650380|ref|XM_005248724.3| PREDICTED: Homo sapiens myosi... 42.1 0.004
gi|1034650379|ref|XM_005248722.3| PREDICTED: Homo sapiens myosi... 42.1 0.004
gi|1034650378|ref|XM_005248721.3| PREDICTED: Homo sapiens myosi... 42.1 0.004
gi|1034650377|ref|XM_005248720.3| PREDICTED: Homo sapiens myosi... 42.1 0.004
gi|1034650376|ref|XM_005248719.3| PREDICTED: Homo sapiens myosi... 42.1 0.004
gi|665505982|ref|NM_001300899.1| Homo sapiens myosin VI (MYO6),... 42.1 0.004
gi|1034609324|ref|XM_017027244.1| PREDICTED: Homo sapiens zinc ... 36.2 0.27
gi|1034609329|ref|XM_017027246.1| PREDICTED: Homo sapiens zinc ... 36.2 0.27
gi|1034609327|ref|XM_017027245.1| PREDICTED: Homo sapiens zinc ... 36.2 0.27
gi|1034609331|ref|XM_017027247.1| PREDICTED: Homo sapiens zinc ... 36.2 0.27
gi|1034609326|ref|XM_005259214.2| PREDICTED: Homo sapiens zinc ... 36.2 0.27
gi|153791569|ref|NM_001099639.1| Homo sapiens zinc finger prote... 36.2 0.27
gi|153791686|ref|NM_001099638.1| Homo sapiens zinc finger prote... 36.2 0.27
gi|153792187|ref|NM_007145.2| Homo sapiens zinc finger protein ... 36.2 0.27
gi|1034638761|ref|XM_011531706.2| PREDICTED: Homo sapiens denti... 36.2 0.27
gi|1034638760|ref|XM_011531705.2| PREDICTED: Homo sapiens denti... 36.2 0.27
gi|197927082|ref|NM_001079911.2| Homo sapiens dentin matrix aci... 36.2 0.27
gi|197927465|ref|NM_004407.3| Homo sapiens dentin matrix acidic... 36.2 0.27
gi|1034696136|ref|XR_001758382.1| PREDICTED: Homo sapiens uncha... 34.2 1.1
gi|1034658064|ref|XR_001745077.1| PREDICTED: Homo sapiens uncha... 34.2 1.1
gi|1034673302|ref|XM_017029204.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
gi|1034673275|ref|XM_017029191.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
gi|1034673281|ref|XM_017029194.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
gi|1034673283|ref|XM_017029195.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
gi|1034673287|ref|XM_017029197.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
gi|1034673307|ref|XM_017029206.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
gi|1034673277|ref|XM_017029192.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
gi|1034673285|ref|XM_017029196.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
gi|1034673279|ref|XM_017029193.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
gi|1034673304|ref|XM_017029205.1| PREDICTED: Homo sapiens HECT,... 32.2 4.2
> gi|92859700|ref|NM_004999.3| Homo sapiens myosin VI (MYO6), transcript
variant 1, mRNA
Length=8662
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAAACTTATCTCTGGATTCAC 48
|||||||||||||||||||||
Sbjct 2128 TAAACTTATCTCTGGATTCAC 2108
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAATCCAGAGATAAGTTTA 21
|||||||||||||||||||||
Sbjct 2108 GTGAATCCAGAGATAAGTTTA 2128
> gi|1034650383|ref|XM_005248726.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X7, mRNA
Length=8580
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAAACTTATCTCTGGATTCAC 48
|||||||||||||||||||||
Sbjct 2144 TAAACTTATCTCTGGATTCAC 2124
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAATCCAGAGATAAGTTTA 21
|||||||||||||||||||||
Sbjct 2124 GTGAATCCAGAGATAAGTTTA 2144
> gi|1034650381|ref|XM_017010899.1| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X6, mRNA
Length=8610
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAAACTTATCTCTGGATTCAC 48
|||||||||||||||||||||
Sbjct 2144 TAAACTTATCTCTGGATTCAC 2124
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAATCCAGAGATAAGTTTA 21
|||||||||||||||||||||
Sbjct 2124 GTGAATCCAGAGATAAGTTTA 2144
> gi|1034650380|ref|XM_005248724.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X5, mRNA
Length=8637
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAAACTTATCTCTGGATTCAC 48
|||||||||||||||||||||
Sbjct 2144 TAAACTTATCTCTGGATTCAC 2124
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAATCCAGAGATAAGTTTA 21
|||||||||||||||||||||
Sbjct 2124 GTGAATCCAGAGATAAGTTTA 2144
> gi|1034650379|ref|XM_005248722.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X4, mRNA
Length=8649
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAAACTTATCTCTGGATTCAC 48
|||||||||||||||||||||
Sbjct 2144 TAAACTTATCTCTGGATTCAC 2124
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAATCCAGAGATAAGTTTA 21
|||||||||||||||||||||
Sbjct 2124 GTGAATCCAGAGATAAGTTTA 2144
> gi|1034650378|ref|XM_005248721.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X3, mRNA
Length=8664
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAAACTTATCTCTGGATTCAC 48
|||||||||||||||||||||
Sbjct 2144 TAAACTTATCTCTGGATTCAC 2124
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAATCCAGAGATAAGTTTA 21
|||||||||||||||||||||
Sbjct 2124 GTGAATCCAGAGATAAGTTTA 2144
> gi|1034650377|ref|XM_005248720.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X2, mRNA
Length=8676
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAAACTTATCTCTGGATTCAC 48
|||||||||||||||||||||
Sbjct 2144 TAAACTTATCTCTGGATTCAC 2124
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAATCCAGAGATAAGTTTA 21
|||||||||||||||||||||
Sbjct 2124 GTGAATCCAGAGATAAGTTTA 2144
> gi|1034650376|ref|XM_005248719.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X1, mRNA
Length=8703
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAAACTTATCTCTGGATTCAC 48
|||||||||||||||||||||
Sbjct 2144 TAAACTTATCTCTGGATTCAC 2124
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAATCCAGAGATAAGTTTA 21
|||||||||||||||||||||
Sbjct 2124 GTGAATCCAGAGATAAGTTTA 2144
> gi|665505982|ref|NM_001300899.1| Homo sapiens myosin VI (MYO6),
transcript variant 2, mRNA
Length=8609
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAAACTTATCTCTGGATTCAC 48
|||||||||||||||||||||
Sbjct 2144 TAAACTTATCTCTGGATTCAC 2124
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAATCCAGAGATAAGTTTA 21
|||||||||||||||||||||
Sbjct 2124 GTGAATCCAGAGATAAGTTTA 2144
> gi|1034609324|ref|XM_017027244.1| PREDICTED: Homo sapiens zinc
finger protein 146 (ZNF146), transcript variant X1, mRNA
Length=3302
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 35 ATCTCTGGATTCACTTTT 52
||||||||||||||||||
Sbjct 2440 ATCTCTGGATTCACTTTT 2423
> gi|1034609329|ref|XM_017027246.1| PREDICTED: Homo sapiens zinc
finger protein 146 (ZNF146), transcript variant X4, mRNA
Length=3206
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 35 ATCTCTGGATTCACTTTT 52
||||||||||||||||||
Sbjct 2344 ATCTCTGGATTCACTTTT 2327
> gi|1034609327|ref|XM_017027245.1| PREDICTED: Homo sapiens zinc
finger protein 146 (ZNF146), transcript variant X3, mRNA
Length=3307
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 35 ATCTCTGGATTCACTTTT 52
||||||||||||||||||
Sbjct 2445 ATCTCTGGATTCACTTTT 2428
> gi|1034609331|ref|XM_017027247.1| PREDICTED: Homo sapiens zinc
finger protein 146 (ZNF146), transcript variant X5, mRNA
Length=3268
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 35 ATCTCTGGATTCACTTTT 52
||||||||||||||||||
Sbjct 2406 ATCTCTGGATTCACTTTT 2389
> gi|1034609326|ref|XM_005259214.2| PREDICTED: Homo sapiens zinc
finger protein 146 (ZNF146), transcript variant X2, mRNA
Length=3676
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 35 ATCTCTGGATTCACTTTT 52
||||||||||||||||||
Sbjct 2814 ATCTCTGGATTCACTTTT 2797
> gi|153791569|ref|NM_001099639.1| Homo sapiens zinc finger protein
146 (ZNF146), transcript variant 3, mRNA
Length=3765
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 35 ATCTCTGGATTCACTTTT 52
||||||||||||||||||
Sbjct 2874 ATCTCTGGATTCACTTTT 2857
> gi|153791686|ref|NM_001099638.1| Homo sapiens zinc finger protein
146 (ZNF146), transcript variant 2, mRNA
Length=3806
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 35 ATCTCTGGATTCACTTTT 52
||||||||||||||||||
Sbjct 2915 ATCTCTGGATTCACTTTT 2898
> gi|153792187|ref|NM_007145.2| Homo sapiens zinc finger protein
146 (ZNF146), transcript variant 1, mRNA
Length=3880
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 35 ATCTCTGGATTCACTTTT 52
||||||||||||||||||
Sbjct 2989 ATCTCTGGATTCACTTTT 2972
> gi|1034638761|ref|XM_011531706.2| PREDICTED: Homo sapiens dentin
matrix acidic phosphoprotein 1 (DMP1), transcript variant
X2, mRNA
Length=3510
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 36 TCTCTGGATTCACTTTTT 53
||||||||||||||||||
Sbjct 2133 TCTCTGGATTCACTTTTT 2116
> gi|1034638760|ref|XM_011531705.2| PREDICTED: Homo sapiens dentin
matrix acidic phosphoprotein 1 (DMP1), transcript variant
X1, mRNA
Length=3558
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 36 TCTCTGGATTCACTTTTT 53
||||||||||||||||||
Sbjct 2181 TCTCTGGATTCACTTTTT 2164
> gi|197927082|ref|NM_001079911.2| Homo sapiens dentin matrix acidic
phosphoprotein 1 (DMP1), transcript variant 2, mRNA
Length=2645
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 36 TCTCTGGATTCACTTTTT 53
||||||||||||||||||
Sbjct 1258 TCTCTGGATTCACTTTTT 1241
> gi|197927465|ref|NM_004407.3| Homo sapiens dentin matrix acidic
phosphoprotein 1 (DMP1), transcript variant 1, mRNA
Length=2693
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 36 TCTCTGGATTCACTTTTT 53
||||||||||||||||||
Sbjct 1306 TCTCTGGATTCACTTTTT 1289
> gi|1034696136|ref|XR_001758382.1| PREDICTED: Homo sapiens uncharacterized
LOC107986764 (LOC107986764), ncRNA
Length=2660
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 13 ATAAGTTTACTCGAGTA 29
|||||||||||||||||
Sbjct 2431 ATAAGTTTACTCGAGTA 2415
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 20 TACTCGAGTAAACTTAT 36
|||||||||||||||||
Sbjct 2415 TACTCGAGTAAACTTAT 2431
> gi|1034658064|ref|XR_001745077.1| PREDICTED: Homo sapiens uncharacterized
LOC107986764 (LOC107986764), ncRNA
Length=2660
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 13 ATAAGTTTACTCGAGTA 29
|||||||||||||||||
Sbjct 2431 ATAAGTTTACTCGAGTA 2415
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 20 TACTCGAGTAAACTTAT 36
|||||||||||||||||
Sbjct 2415 TACTCGAGTAAACTTAT 2431
> gi|1034673302|ref|XM_017029204.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X16, mRNA
Length=16792
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2816 TCTGGATTCACTTTTT 2801
> gi|1034673275|ref|XM_017029191.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X1, mRNA
Length=17042
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2817 TCTGGATTCACTTTTT 2802
> gi|1034673281|ref|XM_017029194.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X4, mRNA
Length=16997
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2817 TCTGGATTCACTTTTT 2802
> gi|1034673283|ref|XM_017029195.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X5, mRNA
Length=16994
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2817 TCTGGATTCACTTTTT 2802
> gi|1034673287|ref|XM_017029197.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X7, mRNA
Length=16943
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2817 TCTGGATTCACTTTTT 2802
> gi|1034673307|ref|XM_017029206.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X19, mRNA
Length=16640
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2817 TCTGGATTCACTTTTT 2802
> gi|1034673277|ref|XM_017029192.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X2, mRNA
Length=17039
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2817 TCTGGATTCACTTTTT 2802
> gi|1034673285|ref|XM_017029196.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X6, mRNA
Length=16991
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2817 TCTGGATTCACTTTTT 2802
> gi|1034673279|ref|XM_017029193.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X3, mRNA
Length=17021
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2817 TCTGGATTCACTTTTT 2802
> gi|1034673304|ref|XM_017029205.1| PREDICTED: Homo sapiens HECT,
UBA and WWE domain containing 1, E3 ubiquitin protein ligase
(HUWE1), transcript variant X17, mRNA
Length=16670
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TCTGGATTCACTTTTT 53
||||||||||||||||
Sbjct 2817 TCTGGATTCACTTTTT 2802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2