BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GTGAACATTATGAAGTCCTTTCTCGAGAAAGGACTTCATAATGTTCACTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|296010846|ref|NM_133436.3| Homo sapiens asparagine synthetas... 46.1 3e-04
gi|296010851|ref|NM_001178077.1| Homo sapiens asparagine synthe... 46.1 3e-04
gi|296010845|ref|NM_183356.3| Homo sapiens asparagine synthetas... 46.1 3e-04
gi|296010844|ref|NM_001673.4| Homo sapiens asparagine synthetas... 46.1 3e-04
gi|296010847|ref|NM_001178075.1| Homo sapiens asparagine synthe... 46.1 3e-04
gi|296010849|ref|NM_001178076.1| Homo sapiens asparagine synthe... 46.1 3e-04
gi|388454210|ref|NM_206999.2| Homo sapiens CCR4-NOT transcripti... 34.2 1.1
gi|388454195|ref|NM_016284.4| Homo sapiens CCR4-NOT transcripti... 34.2 1.1
gi|388454231|ref|NR_049763.1| Homo sapiens CCR4-NOT transcripti... 34.2 1.1
gi|388454219|ref|NM_001265612.1| Homo sapiens CCR4-NOT transcri... 34.2 1.1
gi|75905820|ref|NM_000362.4| Homo sapiens TIMP metallopeptidase... 34.2 1.1
gi|1034690274|ref|XR_919909.2| PREDICTED: Homo sapiens uncharac... 32.2 4.2
gi|1034626289|ref|XR_937286.2| PREDICTED: Homo sapiens uncharac... 32.2 4.2
gi|1034694111|ref|XR_001757326.1| PREDICTED: Homo sapiens uncha... 32.2 4.2
gi|1034647860|ref|XR_001742931.1| PREDICTED: Homo sapiens uncha... 32.2 4.2
> gi|296010846|ref|NM_133436.3| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 1, mRNA
Length=2339
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 28 AAAGGACTTCATAATGTTCACTT 50
|||||||||||||||||||||||
Sbjct 1449 AAAGGACTTCATAATGTTCACTT 1427
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAACATTATGAAGTCCTTT 21
|||||||||||||||||||||
Sbjct 1429 GTGAACATTATGAAGTCCTTT 1449
> gi|296010851|ref|NM_001178077.1| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 6,
mRNA
Length=1709
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 28 AAAGGACTTCATAATGTTCACTT 50
|||||||||||||||||||||||
Sbjct 819 AAAGGACTTCATAATGTTCACTT 797
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAACATTATGAAGTCCTTT 21
|||||||||||||||||||||
Sbjct 799 GTGAACATTATGAAGTCCTTT 819
> gi|296010845|ref|NM_183356.3| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 3, mRNA
Length=2362
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 28 AAAGGACTTCATAATGTTCACTT 50
|||||||||||||||||||||||
Sbjct 1472 AAAGGACTTCATAATGTTCACTT 1450
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAACATTATGAAGTCCTTT 21
|||||||||||||||||||||
Sbjct 1452 GTGAACATTATGAAGTCCTTT 1472
> gi|296010844|ref|NM_001673.4| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 2, mRNA
Length=2084
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 28 AAAGGACTTCATAATGTTCACTT 50
|||||||||||||||||||||||
Sbjct 1194 AAAGGACTTCATAATGTTCACTT 1172
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAACATTATGAAGTCCTTT 21
|||||||||||||||||||||
Sbjct 1174 GTGAACATTATGAAGTCCTTT 1194
> gi|296010847|ref|NM_001178075.1| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 4,
mRNA
Length=2010
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 28 AAAGGACTTCATAATGTTCACTT 50
|||||||||||||||||||||||
Sbjct 1120 AAAGGACTTCATAATGTTCACTT 1098
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAACATTATGAAGTCCTTT 21
|||||||||||||||||||||
Sbjct 1100 GTGAACATTATGAAGTCCTTT 1120
> gi|296010849|ref|NM_001178076.1| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 5,
mRNA
Length=1776
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 28 AAAGGACTTCATAATGTTCACTT 50
|||||||||||||||||||||||
Sbjct 886 AAAGGACTTCATAATGTTCACTT 864
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTGAACATTATGAAGTCCTTT 21
|||||||||||||||||||||
Sbjct 866 GTGAACATTATGAAGTCCTTT 886
> gi|388454210|ref|NM_206999.2| Homo sapiens CCR4-NOT transcription
complex subunit 1 (CNOT1), transcript variant 2, mRNA
Length=5221
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 5 ACATTATGAAGTCCTTT 21
|||||||||||||||||
Sbjct 1463 ACATTATGAAGTCCTTT 1447
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 28 AAAGGACTTCATAATGT 44
|||||||||||||||||
Sbjct 1447 AAAGGACTTCATAATGT 1463
> gi|388454195|ref|NM_016284.4| Homo sapiens CCR4-NOT transcription
complex subunit 1 (CNOT1), transcript variant 1, mRNA
Length=8476
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 5 ACATTATGAAGTCCTTT 21
|||||||||||||||||
Sbjct 1463 ACATTATGAAGTCCTTT 1447
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 28 AAAGGACTTCATAATGT 44
|||||||||||||||||
Sbjct 1447 AAAGGACTTCATAATGT 1463
> gi|388454231|ref|NR_049763.1| Homo sapiens CCR4-NOT transcription
complex subunit 1 (CNOT1), transcript variant 4, non-coding
RNA
Length=8644
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 5 ACATTATGAAGTCCTTT 21
|||||||||||||||||
Sbjct 1463 ACATTATGAAGTCCTTT 1447
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 28 AAAGGACTTCATAATGT 44
|||||||||||||||||
Sbjct 1447 AAAGGACTTCATAATGT 1463
> gi|388454219|ref|NM_001265612.1| Homo sapiens CCR4-NOT transcription
complex subunit 1 (CNOT1), transcript variant 3, mRNA
Length=8461
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 5 ACATTATGAAGTCCTTT 21
|||||||||||||||||
Sbjct 1463 ACATTATGAAGTCCTTT 1447
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 28 AAAGGACTTCATAATGT 44
|||||||||||||||||
Sbjct 1447 AAAGGACTTCATAATGT 1463
> gi|75905820|ref|NM_000362.4| Homo sapiens TIMP metallopeptidase
inhibitor 3 (TIMP3), mRNA
Length=5496
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 37 CATAATGTTCACTTTTT 53
|||||||||||||||||
Sbjct 5421 CATAATGTTCACTTTTT 5437
> gi|1034690274|ref|XR_919909.2| PREDICTED: Homo sapiens uncharacterized
LOC105372542 (LOC105372542), ncRNA
Length=5147
Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 30 AGGACTTCATAATGTTCACT 49
||||||||||||||| ||||
Sbjct 4020 AGGACTTCATAATGTCCACT 4001
> gi|1034626289|ref|XR_937286.2| PREDICTED: Homo sapiens uncharacterized
LOC105372542 (LOC105372542), ncRNA
Length=5147
Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 30 AGGACTTCATAATGTTCACT 49
||||||||||||||| ||||
Sbjct 4020 AGGACTTCATAATGTCCACT 4001
> gi|1034694111|ref|XR_001757326.1| PREDICTED: Homo sapiens uncharacterized
LOC101927012 (LOC101927012), transcript variant
X2, ncRNA
Length=5946
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 38 ATAATGTTCACTTTTT 53
||||||||||||||||
Sbjct 5533 ATAATGTTCACTTTTT 5548
> gi|1034647860|ref|XR_001742931.1| PREDICTED: Homo sapiens uncharacterized
LOC101927012 (LOC101927012), transcript variant
X2, ncRNA
Length=5946
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 38 ATAATGTTCACTTTTT 53
||||||||||||||||
Sbjct 5533 ATAATGTTCACTTTTT 5548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2