BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GTCGGAAATTGATCCTTGTAA (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034675171|ref|XM_017029801.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675164|ref|XM_011545583.2| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675163|ref|XM_005274594.4| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675159|ref|XM_017029796.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675156|ref|XM_017029795.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675149|ref|XM_017029793.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675139|ref|XM_017029788.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|768032743|ref|XM_011545579.1| PREDICTED: Homo sapiens zinc f... 42.1 6e-04
gi|1034675141|ref|XM_017029789.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675151|ref|XM_017029794.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|296010876|ref|NM_003410.3| Homo sapiens zinc finger protein,... 42.1 6e-04
gi|296010879|ref|NM_001178085.1| Homo sapiens zinc finger prote... 42.1 6e-04
gi|296010877|ref|NM_001178084.1| Homo sapiens zinc finger prote... 42.1 6e-04
gi|296010881|ref|NM_001178086.1| Homo sapiens zinc finger prote... 42.1 6e-04
gi|296010907|ref|NM_001178095.1| Homo sapiens zinc finger prote... 42.1 6e-04
gi|1034675165|ref|XM_017029798.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675161|ref|XM_017029797.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675169|ref|XM_017029800.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675153|ref|XM_005274591.4| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675143|ref|XM_017029790.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675138|ref|XM_006724513.3| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675145|ref|XM_017029791.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675158|ref|XM_006724515.3| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675154|ref|XM_011545581.2| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675147|ref|XM_017029792.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|768032740|ref|XM_011545578.1| PREDICTED: Homo sapiens zinc f... 42.1 6e-04
gi|1034675167|ref|XM_017029799.1| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|1034675155|ref|XM_005274592.3| PREDICTED: Homo sapiens zinc ... 42.1 6e-04
gi|768013541|ref|XM_011529198.1| PREDICTED: Homo sapiens ninein... 28.2 9.2
gi|1034624561|ref|XM_017027735.1| PREDICTED: Homo sapiens ninei... 28.2 9.2
gi|1034624557|ref|XM_011529195.2| PREDICTED: Homo sapiens ninei... 28.2 9.2
gi|1034624556|ref|XM_011529194.2| PREDICTED: Homo sapiens ninei... 28.2 9.2
gi|1034624558|ref|XM_017027734.1| PREDICTED: Homo sapiens ninei... 28.2 9.2
gi|1034624560|ref|XM_011529197.2| PREDICTED: Homo sapiens ninei... 28.2 9.2
gi|768013523|ref|XM_011529192.1| PREDICTED: Homo sapiens ninein... 28.2 9.2
gi|768013521|ref|XM_011529191.1| PREDICTED: Homo sapiens ninein... 28.2 9.2
gi|768013514|ref|XM_011529190.1| PREDICTED: Homo sapiens ninein... 28.2 9.2
gi|768013525|ref|XM_011529193.1| PREDICTED: Homo sapiens ninein... 28.2 9.2
gi|1034624550|ref|XM_011529186.2| PREDICTED: Homo sapiens ninei... 28.2 9.2
gi|1034624553|ref|XM_011529187.2| PREDICTED: Homo sapiens ninei... 28.2 9.2
gi|768013511|ref|XM_011529189.1| PREDICTED: Homo sapiens ninein... 28.2 9.2
gi|1034624551|ref|XM_017027732.1| PREDICTED: Homo sapiens ninei... 28.2 9.2
gi|1034624554|ref|XM_017027733.1| PREDICTED: Homo sapiens ninei... 28.2 9.2
gi|768013507|ref|XM_011529188.1| PREDICTED: Homo sapiens ninein... 28.2 9.2
gi|970841882|ref|NM_025176.5| Homo sapiens ninein like (NINL), ... 28.2 9.2
gi|970949399|ref|NM_001318226.1| Homo sapiens ninein like (NINL... 28.2 9.2
gi|219842354|ref|NM_002009.3| Homo sapiens fibroblast growth fa... 28.2 9.2
gi|153090206|ref|NM_001099756.1| Homo sapiens syntabulin (SYBU)... 28.2 9.2
> gi|1034675171|ref|XM_017029801.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X23, mRNA
Length=7022
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 596 GTCGGAAATTGATCCTTGTAA 616
> gi|1034675164|ref|XM_011545583.2| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X19, mRNA
Length=7159
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 733 GTCGGAAATTGATCCTTGTAA 753
> gi|1034675163|ref|XM_005274594.4| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X18, mRNA
Length=8609
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 2183 GTCGGAAATTGATCCTTGTAA 2203
> gi|1034675159|ref|XM_017029796.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X16, mRNA
Length=7184
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 899 GTCGGAAATTGATCCTTGTAA 919
> gi|1034675156|ref|XM_017029795.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X14, mRNA
Length=7173
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 747 GTCGGAAATTGATCCTTGTAA 767
> gi|1034675149|ref|XM_017029793.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X8, mRNA
Length=7290
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 864 GTCGGAAATTGATCCTTGTAA 884
> gi|1034675139|ref|XM_017029788.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X3, mRNA
Length=7756
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1330 GTCGGAAATTGATCCTTGTAA 1350
> gi|768032743|ref|XM_011545579.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X9, mRNA
Length=7503
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1077 GTCGGAAATTGATCCTTGTAA 1097
> gi|1034675141|ref|XM_017029789.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X4, mRNA
Length=8318
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1892 GTCGGAAATTGATCCTTGTAA 1912
> gi|1034675151|ref|XM_017029794.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X10, mRNA
Length=7544
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1118 GTCGGAAATTGATCCTTGTAA 1138
> gi|296010876|ref|NM_003410.3| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 1, mRNA
Length=7604
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1012 GTCGGAAATTGATCCTTGTAA 1032
> gi|296010879|ref|NM_001178085.1| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 3, mRNA
Length=7740
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1148 GTCGGAAATTGATCCTTGTAA 1168
> gi|296010877|ref|NM_001178084.1| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 2, mRNA
Length=7396
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 804 GTCGGAAATTGATCCTTGTAA 824
> gi|296010881|ref|NM_001178086.1| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 4, mRNA
Length=6801
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 209 GTCGGAAATTGATCCTTGTAA 229
> gi|296010907|ref|NM_001178095.1| Homo sapiens zinc finger protein,
X-linked (ZFX), transcript variant 5, mRNA
Length=7534
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 883 GTCGGAAATTGATCCTTGTAA 903
> gi|1034675165|ref|XM_017029798.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X20, mRNA
Length=7404
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 978 GTCGGAAATTGATCCTTGTAA 998
> gi|1034675161|ref|XM_017029797.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X17, mRNA
Length=7784
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1358 GTCGGAAATTGATCCTTGTAA 1378
> gi|1034675169|ref|XM_017029800.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X22, mRNA
Length=7265
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 980 GTCGGAAATTGATCCTTGTAA 1000
> gi|1034675153|ref|XM_005274591.4| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X11, mRNA
Length=7604
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1178 GTCGGAAATTGATCCTTGTAA 1198
> gi|1034675143|ref|XM_017029790.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X5, mRNA
Length=7723
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1297 GTCGGAAATTGATCCTTGTAA 1317
> gi|1034675138|ref|XM_006724513.3| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X1, mRNA
Length=7833
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1407 GTCGGAAATTGATCCTTGTAA 1427
> gi|1034675145|ref|XM_017029791.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X6, mRNA
Length=7613
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1187 GTCGGAAATTGATCCTTGTAA 1207
> gi|1034675158|ref|XM_006724515.3| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X15, mRNA
Length=7694
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1409 GTCGGAAATTGATCCTTGTAA 1429
> gi|1034675154|ref|XM_011545581.2| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X12, mRNA
Length=7645
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1219 GTCGGAAATTGATCCTTGTAA 1239
> gi|1034675147|ref|XM_017029792.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X7, mRNA
Length=7492
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1066 GTCGGAAATTGATCCTTGTAA 1086
> gi|768032740|ref|XM_011545578.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X2, mRNA
Length=7715
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 1289 GTCGGAAATTGATCCTTGTAA 1309
> gi|1034675167|ref|XM_017029799.1| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X21, mRNA
Length=7278
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 993 GTCGGAAATTGATCCTTGTAA 1013
> gi|1034675155|ref|XM_005274592.3| PREDICTED: Homo sapiens zinc
finger protein, X-linked (ZFX), transcript variant X13, mRNA
Length=7419
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GTCGGAAATTGATCCTTGTAA 21
|||||||||||||||||||||
Sbjct 993 GTCGGAAATTGATCCTTGTAA 1013
> gi|768013541|ref|XM_011529198.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X16, mRNA
Length=3277
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 1820 AATTGATCCTTGTA 1807
> gi|1034624561|ref|XM_017027735.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X15, mRNA
Length=3741
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 2284 AATTGATCCTTGTA 2271
> gi|1034624557|ref|XM_011529195.2| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X12, mRNA
Length=3736
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 2279 AATTGATCCTTGTA 2266
> gi|1034624556|ref|XM_011529194.2| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X11, mRNA
Length=4911
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 3454 AATTGATCCTTGTA 3441
> gi|1034624558|ref|XM_017027734.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X13, mRNA
Length=4095
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 2638 AATTGATCCTTGTA 2625
> gi|1034624560|ref|XM_011529197.2| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X14, mRNA
Length=4105
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 2648 AATTGATCCTTGTA 2635
> gi|768013523|ref|XM_011529192.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X9, mRNA
Length=5642
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 4185 AATTGATCCTTGTA 4172
> gi|768013521|ref|XM_011529191.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X7, mRNA
Length=4722
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 3265 AATTGATCCTTGTA 3252
> gi|768013514|ref|XM_011529190.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X6, mRNA
Length=4929
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 3472 AATTGATCCTTGTA 3459
> gi|768013525|ref|XM_011529193.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X10, mRNA
Length=3882
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 2425 AATTGATCCTTGTA 2412
> gi|1034624550|ref|XM_011529186.2| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X1, mRNA
Length=5830
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 4373 AATTGATCCTTGTA 4360
> gi|1034624553|ref|XM_011529187.2| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X3, mRNA
Length=5815
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 4358 AATTGATCCTTGTA 4345
> gi|768013511|ref|XM_011529189.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X5, mRNA
Length=5215
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 3758 AATTGATCCTTGTA 3745
> gi|1034624551|ref|XM_017027732.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X2, mRNA
Length=7149
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 5692 AATTGATCCTTGTA 5679
> gi|1034624554|ref|XM_017027733.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X8, mRNA
Length=5261
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 3804 AATTGATCCTTGTA 3791
> gi|768013507|ref|XM_011529188.1| PREDICTED: Homo sapiens ninein
like (NINL), transcript variant X4, mRNA
Length=5207
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 3750 AATTGATCCTTGTA 3737
> gi|970841882|ref|NM_025176.5| Homo sapiens ninein like (NINL),
transcript variant 1, mRNA
Length=5006
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 3534 AATTGATCCTTGTA 3521
> gi|970949399|ref|NM_001318226.1| Homo sapiens ninein like (NINL),
transcript variant 2, mRNA
Length=3959
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AATTGATCCTTGTA 20
||||||||||||||
Sbjct 2487 AATTGATCCTTGTA 2474
> gi|219842354|ref|NM_002009.3| Homo sapiens fibroblast growth
factor 7 (FGF7), mRNA
Length=3936
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 4 GGAAATTGATCCTTGTAA 21
||||||| ||||||||||
Sbjct 2640 GGAAATTCATCCTTGTAA 2623
> gi|153090206|ref|NM_001099756.1| Homo sapiens syntabulin (SYBU),
transcript variant 12, mRNA
Length=2969
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GAAATTGATCCTTG 18
||||||||||||||
Sbjct 174 GAAATTGATCCTTG 187
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2