BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GTATGAGATGAACGGCAGGAAAGC (evalue = 10)
Length=24
Score E
Sequences producing significant alignments: (Bits) Value
gi|767919673|ref|XM_011511807.1| PREDICTED: Homo sapiens interl... 48.1 2e-05
gi|1034616487|ref|XR_923024.2| PREDICTED: Homo sapiens interleu... 48.1 2e-05
gi|1034616481|ref|XM_011511801.2| PREDICTED: Homo sapiens inter... 48.1 2e-05
gi|1034616485|ref|XM_011511804.2| PREDICTED: Homo sapiens inter... 48.1 2e-05
gi|1034616486|ref|XM_011511805.2| PREDICTED: Homo sapiens inter... 48.1 2e-05
gi|387527982|ref|NR_048564.1| Homo sapiens interleukin 1 recept... 48.1 2e-05
gi|1034616483|ref|XM_011511803.2| PREDICTED: Homo sapiens inter... 48.1 2e-05
gi|387527983|ref|NM_001261419.1| Homo sapiens interleukin 1 rec... 48.1 2e-05
gi|27894332|ref|NM_004633.3| Homo sapiens interleukin 1 recepto... 48.1 2e-05
gi|1034616488|ref|XM_017004889.1| PREDICTED: Homo sapiens inter... 48.1 2e-05
gi|1034616484|ref|XM_006712734.3| PREDICTED: Homo sapiens inter... 48.1 2e-05
gi|1034616482|ref|XM_006712736.3| PREDICTED: Homo sapiens inter... 48.1 2e-05
gi|1034682008|ref|XR_001732115.1| PREDICTED: Homo sapiens uncha... 32.2 0.94
gi|1034682006|ref|XR_001732113.1| PREDICTED: Homo sapiens uncha... 32.2 0.94
gi|1034577451|ref|XR_001748529.1| PREDICTED: Homo sapiens uncha... 32.2 0.94
gi|1034577449|ref|XR_001748527.1| PREDICTED: Homo sapiens uncha... 32.2 0.94
gi|1034606861|ref|XM_011527804.2| PREDICTED: Homo sapiens straw... 30.2 3.7
gi|154355003|ref|NM_001100122.1| Homo sapiens strawberry notch ... 30.2 3.7
gi|154355001|ref|NM_014963.2| Homo sapiens strawberry notch hom... 30.2 3.7
> gi|767919673|ref|XM_011511807.1| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X9, mRNA
Length=3855
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 3003 GTATGAGATGAACGGCAGGAAAGC 2980
> gi|1034616487|ref|XR_923024.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X7, misc_RNA
Length=3583
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 3003 GTATGAGATGAACGGCAGGAAAGC 2980
> gi|1034616481|ref|XM_011511801.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X1, mRNA
Length=3938
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 3003 GTATGAGATGAACGGCAGGAAAGC 2980
> gi|1034616485|ref|XM_011511804.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X5, mRNA
Length=1510
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 696 GTATGAGATGAACGGCAGGAAAGC 673
> gi|1034616486|ref|XM_011511805.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X6, mRNA
Length=2283
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 1469 GTATGAGATGAACGGCAGGAAAGC 1446
> gi|387527982|ref|NR_048564.1| Homo sapiens interleukin 1 receptor
type 2 (IL1R2), transcript variant 2, non-coding RNA
Length=1463
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 630 GTATGAGATGAACGGCAGGAAAGC 607
> gi|1034616483|ref|XM_011511803.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X3, mRNA
Length=3396
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 2582 GTATGAGATGAACGGCAGGAAAGC 2559
> gi|387527983|ref|NM_001261419.1| Homo sapiens interleukin 1 receptor
type 2 (IL1R2), transcript variant 3, mRNA
Length=1204
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 643 GTATGAGATGAACGGCAGGAAAGC 620
> gi|27894332|ref|NM_004633.3| Homo sapiens interleukin 1 receptor
type 2 (IL1R2), transcript variant 1, mRNA
Length=1484
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 643 GTATGAGATGAACGGCAGGAAAGC 620
> gi|1034616488|ref|XM_017004889.1| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X8, mRNA
Length=1367
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 553 GTATGAGATGAACGGCAGGAAAGC 530
> gi|1034616484|ref|XM_006712734.3| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X4, mRNA
Length=1481
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 667 GTATGAGATGAACGGCAGGAAAGC 644
> gi|1034616482|ref|XM_006712736.3| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X2, mRNA
Length=1518
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 GTATGAGATGAACGGCAGGAAAGC 24
||||||||||||||||||||||||
Sbjct 704 GTATGAGATGAACGGCAGGAAAGC 681
> gi|1034682008|ref|XR_001732115.1| PREDICTED: Homo sapiens uncharacterized
LOC107984427 (LOC107984427), transcript variant
X5, ncRNA
Length=2337
Score = 32.2 bits (16), Expect = 0.94
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 ATGAGATGAACGGCAGGAAA 22
|||||||||| |||||||||
Sbjct 405 ATGAGATGAAGGGCAGGAAA 424
> gi|1034682006|ref|XR_001732113.1| PREDICTED: Homo sapiens uncharacterized
LOC107984427 (LOC107984427), transcript variant
X3, ncRNA
Length=2366
Score = 32.2 bits (16), Expect = 0.94
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 ATGAGATGAACGGCAGGAAA 22
|||||||||| |||||||||
Sbjct 434 ATGAGATGAAGGGCAGGAAA 453
> gi|1034577451|ref|XR_001748529.1| PREDICTED: Homo sapiens uncharacterized
LOC107984427 (LOC107984427), transcript variant
X5, ncRNA
Length=2337
Score = 32.2 bits (16), Expect = 0.94
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 ATGAGATGAACGGCAGGAAA 22
|||||||||| |||||||||
Sbjct 405 ATGAGATGAAGGGCAGGAAA 424
> gi|1034577449|ref|XR_001748527.1| PREDICTED: Homo sapiens uncharacterized
LOC107984427 (LOC107984427), transcript variant
X3, ncRNA
Length=2366
Score = 32.2 bits (16), Expect = 0.94
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 ATGAGATGAACGGCAGGAAA 22
|||||||||| |||||||||
Sbjct 434 ATGAGATGAAGGGCAGGAAA 453
> gi|1034606861|ref|XM_011527804.2| PREDICTED: Homo sapiens strawberry
notch homolog 2 (Drosophila) (SBNO2), transcript variant
X1, mRNA
Length=4892
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 5 GAGATGAACGGCAGGAAAG 23
||||||| |||||||||||
Sbjct 2456 GAGATGACCGGCAGGAAAG 2474
> gi|154355003|ref|NM_001100122.1| Homo sapiens strawberry notch
homolog 2 (Drosophila) (SBNO2), transcript variant 2, mRNA
Length=4616
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 5 GAGATGAACGGCAGGAAAG 23
||||||| |||||||||||
Sbjct 2151 GAGATGACCGGCAGGAAAG 2169
> gi|154355001|ref|NM_014963.2| Homo sapiens strawberry notch homolog
2 (Drosophila) (SBNO2), transcript variant 1, mRNA
Length=4948
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 5 GAGATGAACGGCAGGAAAG 23
||||||| |||||||||||
Sbjct 2483 GAGATGACCGGCAGGAAAG 2501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4674360680
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2