BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= GGGATCTCTATGTCGGCATGTAG (evalue = 10)

Length=23
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|1034583593|ref|XM_005266216.4| PREDICTED: Homo sapiens cycli...  46.1    5e-05
  gi|767977138|ref|XM_011534864.1| PREDICTED: Homo sapiens cyclin...  46.1    5e-05
  gi|971460834|ref|NM_001318368.1| Homo sapiens cyclin-dependent ...  46.1    5e-05
  gi|971460838|ref|NM_001260.2| Homo sapiens cyclin-dependent kin...  46.1    5e-05


> gi|1034583593|ref|XM_005266216.4| PREDICTED: Homo sapiens cyclin-dependent 
kinase 8 (CDK8), transcript variant X1, mRNA
Length=2448

 Score = 46.1 bits (23),  Expect = 5e-05
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1   GGGATCTCTATGTCGGCATGTAG  23
           |||||||||||||||||||||||
Sbjct  68  GGGATCTCTATGTCGGCATGTAG  90


> gi|767977138|ref|XM_011534864.1| PREDICTED: Homo sapiens cyclin-dependent 
kinase 8 (CDK8), transcript variant X3, mRNA
Length=3011

 Score = 46.1 bits (23),  Expect = 5e-05
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1    GGGATCTCTATGTCGGCATGTAG  23
            |||||||||||||||||||||||
Sbjct  689  GGGATCTCTATGTCGGCATGTAG  711


> gi|971460834|ref|NM_001318368.1| Homo sapiens cyclin-dependent 
kinase 8 (CDK8), transcript variant 2, mRNA
Length=3098

 Score = 46.1 bits (23),  Expect = 5e-05
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1    GGGATCTCTATGTCGGCATGTAG  23
            |||||||||||||||||||||||
Sbjct  710  GGGATCTCTATGTCGGCATGTAG  732


> gi|971460838|ref|NM_001260.2| Homo sapiens cyclin-dependent kinase 
8 (CDK8), transcript variant 1, mRNA
Length=3101

 Score = 46.1 bits (23),  Expect = 5e-05
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1    GGGATCTCTATGTCGGCATGTAG  23
            |||||||||||||||||||||||
Sbjct  710  GGGATCTCTATGTCGGCATGTAG  732



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 4090065595


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2