BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GGCAGTGGGATGATATAAAGTCTCGAGACTTTATATCATCCCACTGCC (evalue = 10)
Length=48
Score E
Sequences producing significant alignments: (Bits) Value
gi|222537766|ref|NR_026730.1| Homo sapiens transmembrane phosph... 42.1 0.004
gi|299523022|ref|NR_033805.1| Homo sapiens WAC antisense RNA 1 ... 34.2 0.92
gi|1034640509|ref|XM_017008395.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640511|ref|XM_017008396.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640495|ref|XM_017008388.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|919185130|ref|NM_001080477.3| Homo sapiens teneurin transmem... 32.2 3.6
gi|1034640493|ref|XM_017008387.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640491|ref|XM_017008386.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640507|ref|XM_017008394.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640505|ref|XM_017008393.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640503|ref|XM_017008392.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640501|ref|XM_017008391.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640499|ref|XM_017008390.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640497|ref|XM_017008389.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
gi|1034640489|ref|XM_017008385.1| PREDICTED: Homo sapiens teneu... 32.2 3.6
> gi|222537766|ref|NR_026730.1| Homo sapiens transmembrane phosphoinositide
3-phosphatase and tensin homolog 2 pseudogene 1
(TPTE2P1), non-coding RNA
Length=6477
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GGCAGTGGGATGATATAAAGT 21
|||||||||||||||||||||
Sbjct 5776 GGCAGTGGGATGATATAAAGT 5796
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ACTTTATATCATCCCACTGCC 48
|||||||||||||||||||||
Sbjct 5796 ACTTTATATCATCCCACTGCC 5776
> gi|299523022|ref|NR_033805.1| Homo sapiens WAC antisense RNA
1 (head to head) (WAC-AS1), long non-coding RNA
Length=5376
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 GGCAGTGGGATGATATA 17
|||||||||||||||||
Sbjct 4760 GGCAGTGGGATGATATA 4776
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGCC 48
|||||||||||||||||
Sbjct 4776 TATATCATCCCACTGCC 4760
> gi|1034640509|ref|XM_017008395.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X11,
mRNA
Length=10349
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 6906 GCAGTGGGATGATATA 6921
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 6921 TATATCATCCCACTGC 6906
> gi|1034640511|ref|XM_017008396.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X12,
mRNA
Length=10384
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 6941 GCAGTGGGATGATATA 6956
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 6956 TATATCATCCCACTGC 6941
> gi|1034640495|ref|XM_017008388.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X4,
mRNA
Length=10911
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7468 GCAGTGGGATGATATA 7483
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7483 TATATCATCCCACTGC 7468
> gi|919185130|ref|NM_001080477.3| Homo sapiens teneurin transmembrane
protein 3 (TENM3), mRNA
Length=10894
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7447 GCAGTGGGATGATATA 7462
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7462 TATATCATCCCACTGC 7447
> gi|1034640493|ref|XM_017008387.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X3,
mRNA
Length=10936
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7493 GCAGTGGGATGATATA 7508
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7508 TATATCATCCCACTGC 7493
> gi|1034640491|ref|XM_017008386.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X2,
mRNA
Length=9073
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7520 GCAGTGGGATGATATA 7535
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7535 TATATCATCCCACTGC 7520
> gi|1034640507|ref|XM_017008394.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X10,
mRNA
Length=11097
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7654 GCAGTGGGATGATATA 7669
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7669 TATATCATCCCACTGC 7654
> gi|1034640505|ref|XM_017008393.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X9,
mRNA
Length=11328
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7885 GCAGTGGGATGATATA 7900
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7900 TATATCATCCCACTGC 7885
> gi|1034640503|ref|XM_017008392.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X8,
mRNA
Length=11349
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7906 GCAGTGGGATGATATA 7921
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7921 TATATCATCCCACTGC 7906
> gi|1034640501|ref|XM_017008391.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X7,
mRNA
Length=11352
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7909 GCAGTGGGATGATATA 7924
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7924 TATATCATCCCACTGC 7909
> gi|1034640499|ref|XM_017008390.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X6,
mRNA
Length=11355
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7912 GCAGTGGGATGATATA 7927
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7927 TATATCATCCCACTGC 7912
> gi|1034640497|ref|XM_017008389.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X5,
mRNA
Length=11373
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7930 GCAGTGGGATGATATA 7945
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7945 TATATCATCCCACTGC 7930
> gi|1034640489|ref|XM_017008385.1| PREDICTED: Homo sapiens teneurin
transmembrane protein 3 (TENM3), transcript variant X1,
mRNA
Length=11376
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GCAGTGGGATGATATA 17
||||||||||||||||
Sbjct 7933 GCAGTGGGATGATATA 7948
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 32 TATATCATCCCACTGC 47
||||||||||||||||
Sbjct 7948 TATATCATCCCACTGC 7933
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 18107678429
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2