BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GGAACCTGGCTTACCAGTATACTCGAGTATACTGGTAAGCCAGGTTCC (evalue = 10)
Length=48
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034683308|ref|XR_914801.2| PREDICTED: Homo sapiens uncharac... 42.1 0.004
gi|222537766|ref|NR_026730.1| Homo sapiens transmembrane phosph... 42.1 0.004
gi|1034585418|ref|XR_941756.2| PREDICTED: Homo sapiens uncharac... 42.1 0.004
gi|1034673487|ref|XM_017029263.1| PREDICTED: Homo sapiens colla... 34.2 0.92
gi|1034673485|ref|XM_017029262.1| PREDICTED: Homo sapiens colla... 34.2 0.92
gi|1034673483|ref|XM_017029261.1| PREDICTED: Homo sapiens colla... 34.2 0.92
gi|1034673479|ref|XM_017029259.1| PREDICTED: Homo sapiens colla... 34.2 0.92
gi|1034673481|ref|XM_017029260.1| PREDICTED: Homo sapiens colla... 34.2 0.92
gi|1034673477|ref|XM_011530849.2| PREDICTED: Homo sapiens colla... 34.2 0.92
gi|366039927|ref|NM_000495.4| Homo sapiens collagen type IV alp... 34.2 0.92
gi|366039998|ref|NM_033380.2| Homo sapiens collagen type IV alp... 34.2 0.92
> gi|1034683308|ref|XR_914801.2| PREDICTED: Homo sapiens uncharacterized
LOC105370117 (LOC105370117), transcript variant X5,
ncRNA
Length=2046
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAGTATA 21
|||||||||||||||||||||
Sbjct 90 GGAACCTGGCTTACCAGTATA 110
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TATACTGGTAAGCCAGGTTCC 48
|||||||||||||||||||||
Sbjct 110 TATACTGGTAAGCCAGGTTCC 90
> gi|222537766|ref|NR_026730.1| Homo sapiens transmembrane phosphoinositide
3-phosphatase and tensin homolog 2 pseudogene 1
(TPTE2P1), non-coding RNA
Length=6477
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAGTATA 21
|||||||||||||||||||||
Sbjct 1695 GGAACCTGGCTTACCAGTATA 1715
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TATACTGGTAAGCCAGGTTCC 48
|||||||||||||||||||||
Sbjct 1715 TATACTGGTAAGCCAGGTTCC 1695
> gi|1034585418|ref|XR_941756.2| PREDICTED: Homo sapiens uncharacterized
LOC105370117 (LOC105370117), transcript variant X2,
ncRNA
Length=672
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAGTATA 21
|||||||||||||||||||||
Sbjct 90 GGAACCTGGCTTACCAGTATA 110
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TATACTGGTAAGCCAGGTTCC 48
|||||||||||||||||||||
Sbjct 110 TATACTGGTAAGCCAGGTTCC 90
> gi|1034673487|ref|XM_017029263.1| PREDICTED: Homo sapiens collagen
type IV alpha 5 (COL4A5), transcript variant X6, mRNA
Length=4869
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAG 17
|||||||||||||||||
Sbjct 2009 GGAACCTGGCTTACCAG 2025
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 CTGGTAAGCCAGGTTCC 48
|||||||||||||||||
Sbjct 2025 CTGGTAAGCCAGGTTCC 2009
> gi|1034673485|ref|XM_017029262.1| PREDICTED: Homo sapiens collagen
type IV alpha 5 (COL4A5), transcript variant X5, mRNA
Length=3959
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAG 17
|||||||||||||||||
Sbjct 2931 GGAACCTGGCTTACCAG 2947
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 CTGGTAAGCCAGGTTCC 48
|||||||||||||||||
Sbjct 2947 CTGGTAAGCCAGGTTCC 2931
> gi|1034673483|ref|XM_017029261.1| PREDICTED: Homo sapiens collagen
type IV alpha 5 (COL4A5), transcript variant X4, mRNA
Length=4394
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAG 17
|||||||||||||||||
Sbjct 2931 GGAACCTGGCTTACCAG 2947
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 CTGGTAAGCCAGGTTCC 48
|||||||||||||||||
Sbjct 2947 CTGGTAAGCCAGGTTCC 2931
> gi|1034673479|ref|XM_017029259.1| PREDICTED: Homo sapiens collagen
type IV alpha 5 (COL4A5), transcript variant X2, mRNA
Length=5782
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAG 17
|||||||||||||||||
Sbjct 2931 GGAACCTGGCTTACCAG 2947
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 CTGGTAAGCCAGGTTCC 48
|||||||||||||||||
Sbjct 2947 CTGGTAAGCCAGGTTCC 2931
> gi|1034673481|ref|XM_017029260.1| PREDICTED: Homo sapiens collagen
type IV alpha 5 (COL4A5), transcript variant X3, mRNA
Length=6241
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAG 17
|||||||||||||||||
Sbjct 2931 GGAACCTGGCTTACCAG 2947
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 CTGGTAAGCCAGGTTCC 48
|||||||||||||||||
Sbjct 2947 CTGGTAAGCCAGGTTCC 2931
> gi|1034673477|ref|XM_011530849.2| PREDICTED: Homo sapiens collagen
type IV alpha 5 (COL4A5), transcript variant X1, mRNA
Length=6272
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAG 17
|||||||||||||||||
Sbjct 2931 GGAACCTGGCTTACCAG 2947
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 CTGGTAAGCCAGGTTCC 48
|||||||||||||||||
Sbjct 2947 CTGGTAAGCCAGGTTCC 2931
> gi|366039927|ref|NM_000495.4| Homo sapiens collagen type IV alpha
5 (COL4A5), transcript variant 1, mRNA
Length=6523
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAG 17
|||||||||||||||||
Sbjct 3183 GGAACCTGGCTTACCAG 3199
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 CTGGTAAGCCAGGTTCC 48
|||||||||||||||||
Sbjct 3199 CTGGTAAGCCAGGTTCC 3183
> gi|366039998|ref|NM_033380.2| Homo sapiens collagen type IV alpha
5 (COL4A5), transcript variant 2, mRNA
Length=6541
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 GGAACCTGGCTTACCAG 17
|||||||||||||||||
Sbjct 3183 GGAACCTGGCTTACCAG 3199
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 CTGGTAAGCCAGGTTCC 48
|||||||||||||||||
Sbjct 3199 CTGGTAAGCCAGGTTCC 3183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 18107678429
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2