BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GGAACCTGACTTCTGCCTTG (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034599518|ref|XM_017024574.1| PREDICTED: Homo sapiens immat... 40.1 0.002
gi|737676316|ref|NM_001303265.1| Homo sapiens immature colon ca... 40.1 0.002
gi|737676268|ref|NM_001545.2| Homo sapiens immature colon carci... 40.1 0.002
gi|169790836|ref|NM_001122607.1| Homo sapiens runt related tran... 28.2 7.3
gi|1034627661|ref|XM_011529770.2| PREDICTED: Homo sapiens runt ... 28.2 7.3
gi|1034625270|ref|XM_017027894.1| PREDICTED: Homo sapiens uridi... 28.2 7.3
gi|1034625272|ref|XM_017027895.1| PREDICTED: Homo sapiens uridi... 28.2 7.3
gi|1034625276|ref|XM_017027897.1| PREDICTED: Homo sapiens uridi... 28.2 7.3
gi|48255912|ref|NM_006470.3| Homo sapiens tripartite motif cont... 28.2 7.3
gi|39780587|ref|NM_018128.4| Homo sapiens TSR1, ribosome matura... 28.2 7.3
gi|1034594286|ref|XM_017023141.1| PREDICTED: Homo sapiens copin... 28.2 7.3
gi|335057547|ref|NM_001242473.1| Homo sapiens chromosome 16 ope... 28.2 7.3
gi|767989907|ref|XM_011523081.1| PREDICTED: Homo sapiens chromo... 28.2 7.3
gi|227452254|ref|NM_017894.5| Homo sapiens zinc finger and SCAN... 28.2 7.3
gi|1034591223|ref|XM_017022392.1| PREDICTED: Homo sapiens zinc ... 28.2 7.3
gi|667751618|ref|NR_125408.1| Homo sapiens myelin expression fa... 28.2 7.3
gi|1034586558|ref|XM_005267474.4| PREDICTED: Homo sapiens KH an... 28.2 7.3
gi|589908372|ref|NM_001290257.1| Homo sapiens KH and NYN domain... 28.2 7.3
gi|126723686|ref|NM_015299.2| Homo sapiens KH and NYN domain co... 28.2 7.3
gi|589908365|ref|NM_001290256.1| Homo sapiens KH and NYN domain... 28.2 7.3
gi|1034586557|ref|XM_011536590.2| PREDICTED: Homo sapiens KH an... 28.2 7.3
gi|1034573043|ref|XM_017017551.1| PREDICTED: Homo sapiens beta-... 28.2 7.3
gi|1034571948|ref|XM_017017187.1| PREDICTED: Homo sapiens FAT a... 28.2 7.3
gi|1034566103|ref|XM_017015549.1| PREDICTED: Homo sapiens CUGBP... 28.2 7.3
gi|1034566101|ref|XM_017015548.1| PREDICTED: Homo sapiens CUGBP... 28.2 7.3
gi|1034566093|ref|XM_017015544.1| PREDICTED: Homo sapiens CUGBP... 28.2 7.3
gi|1034566097|ref|XM_017015546.1| PREDICTED: Homo sapiens CUGBP... 28.2 7.3
gi|1034566095|ref|XM_017015545.1| PREDICTED: Homo sapiens CUGBP... 28.2 7.3
gi|1034566091|ref|XM_017015543.1| PREDICTED: Homo sapiens CUGBP... 28.2 7.3
gi|1034566127|ref|XM_017015560.1| PREDICTED: Homo sapiens CUGBP... 28.2 7.3
gi|134152679|ref|NM_006561.3| Homo sapiens CUGBP, Elav-like fam... 28.2 7.3
gi|1034663789|ref|XM_017014276.1| PREDICTED: Homo sapiens pepti... 28.2 7.3
gi|1034663794|ref|XM_017014278.1| PREDICTED: Homo sapiens pepti... 28.2 7.3
gi|1034663793|ref|XM_006716955.3| PREDICTED: Homo sapiens pepti... 28.2 7.3
gi|1034663791|ref|XM_017014277.1| PREDICTED: Homo sapiens pepti... 28.2 7.3
gi|1034657033|ref|XM_011516589.2| PREDICTED: Homo sapiens tripa... 28.2 7.3
gi|520261937|ref|NM_133339.2| Homo sapiens RAD17 checkpoint cla... 28.2 7.3
gi|520261372|ref|NM_133340.2| Homo sapiens RAD17 checkpoint cla... 28.2 7.3
gi|520261474|ref|NM_133341.2| Homo sapiens RAD17 checkpoint cla... 28.2 7.3
gi|4506382|ref|NM_002873.1| Homo sapiens RAD17 checkpoint clamp... 28.2 7.3
gi|520261541|ref|NM_001278622.1| Homo sapiens RAD17 checkpoint ... 28.2 7.3
gi|1034645568|ref|XM_017009680.1| PREDICTED: Homo sapiens RAD17... 28.2 7.3
gi|1034645566|ref|XM_017009679.1| PREDICTED: Homo sapiens RAD17... 28.2 7.3
gi|520261385|ref|NM_133344.2| Homo sapiens RAD17 checkpoint cla... 28.2 7.3
gi|520261326|ref|NM_133338.2| Homo sapiens RAD17 checkpoint cla... 28.2 7.3
gi|520261445|ref|NM_133342.2| Homo sapiens RAD17 checkpoint cla... 28.2 7.3
gi|1034645570|ref|XM_017009681.1| PREDICTED: Homo sapiens RAD17... 28.2 7.3
gi|19718793|ref|NM_133343.1| Homo sapiens RAD17 checkpoint clam... 28.2 7.3
gi|667751629|ref|NR_125404.1| Homo sapiens uncharacterized LOC1... 28.2 7.3
gi|1034630999|ref|XM_017005649.1| PREDICTED: Homo sapiens sodiu... 28.2 7.3
> gi|1034599518|ref|XM_017024574.1| PREDICTED: Homo sapiens immature
colon carcinoma transcript 1 (ICT1), transcript variant
X1, mRNA
Length=893
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GGAACCTGACTTCTGCCTTG 20
||||||||||||||||||||
Sbjct 326 GGAACCTGACTTCTGCCTTG 307
> gi|737676316|ref|NM_001303265.1| Homo sapiens immature colon
carcinoma transcript 1 (ICT1), transcript variant 2, mRNA
Length=909
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GGAACCTGACTTCTGCCTTG 20
||||||||||||||||||||
Sbjct 333 GGAACCTGACTTCTGCCTTG 314
> gi|737676268|ref|NM_001545.2| Homo sapiens immature colon carcinoma
transcript 1 (ICT1), transcript variant 1, mRNA
Length=914
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GGAACCTGACTTCTGCCTTG 20
||||||||||||||||||||
Sbjct 333 GGAACCTGACTTCTGCCTTG 314
> gi|169790836|ref|NM_001122607.1| Homo sapiens runt related transcription
factor 1 (RUNX1), transcript variant 3, mRNA
Length=2722
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 CTGACTTCTGCCTT 19
||||||||||||||
Sbjct 2343 CTGACTTCTGCCTT 2330
> gi|1034627661|ref|XM_011529770.2| PREDICTED: Homo sapiens runt
related transcription factor 1 (RUNX1), transcript variant
X8, mRNA
Length=1452
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 CTGACTTCTGCCTT 19
||||||||||||||
Sbjct 1072 CTGACTTCTGCCTT 1059
> gi|1034625270|ref|XM_017027894.1| PREDICTED: Homo sapiens uridine-cytidine
kinase 1 like 1 (UCKL1), transcript variant X2,
mRNA
Length=2244
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 2121 CCTGACTTCTGCCT 2108
> gi|1034625272|ref|XM_017027895.1| PREDICTED: Homo sapiens uridine-cytidine
kinase 1 like 1 (UCKL1), transcript variant X5,
mRNA
Length=2241
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 2118 CCTGACTTCTGCCT 2105
> gi|1034625276|ref|XM_017027897.1| PREDICTED: Homo sapiens uridine-cytidine
kinase 1 like 1 (UCKL1), transcript variant X10,
mRNA
Length=2273
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 2150 CCTGACTTCTGCCT 2137
> gi|48255912|ref|NM_006470.3| Homo sapiens tripartite motif containing
16 (TRIM16), mRNA
Length=2920
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 TGACTTCTGCCTTG 20
||||||||||||||
Sbjct 788 TGACTTCTGCCTTG 801
> gi|39780587|ref|NM_018128.4| Homo sapiens TSR1, ribosome maturation
factor (TSR1), mRNA
Length=4890
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 130 CCTGACTTCTGCCT 143
> gi|1034594286|ref|XM_017023141.1| PREDICTED: Homo sapiens copine
7 (CPNE7), transcript variant X6, mRNA
Length=3608
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 367 CCTGACTTCTGCCT 380
> gi|335057547|ref|NM_001242473.1| Homo sapiens chromosome 16 open
reading frame 97 (C16orf97), mRNA
Length=461
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 TGACTTCTGCCTTG 20
||||||||||||||
Sbjct 222 TGACTTCTGCCTTG 235
> gi|767989907|ref|XM_011523081.1| PREDICTED: Homo sapiens chromosome
16 open reading frame 97 (C16orf97), transcript variant
X1, mRNA
Length=710
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 TGACTTCTGCCTTG 20
||||||||||||||
Sbjct 484 TGACTTCTGCCTTG 497
> gi|227452254|ref|NM_017894.5| Homo sapiens zinc finger and SCAN
domain containing 2 (ZSCAN2), transcript variant 2, mRNA
Length=1010
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 922 CCTGACTTCTGCCT 935
> gi|1034591223|ref|XM_017022392.1| PREDICTED: Homo sapiens zinc
finger and SCAN domain containing 2 (ZSCAN2), transcript variant
X1, mRNA
Length=1114
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 1047 CCTGACTTCTGCCT 1060
> gi|667751618|ref|NR_125408.1| Homo sapiens myelin expression
factor 2 (MYEF2), transcript variant 3, non-coding RNA
Length=2658
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 1349 CCTGACTTCTGCCT 1336
> gi|1034586558|ref|XM_005267474.4| PREDICTED: Homo sapiens KH
and NYN domain containing (KHNYN), transcript variant X2, mRNA
Length=6252
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 3771 CCTGACTTCTGCCT 3784
> gi|589908372|ref|NM_001290257.1| Homo sapiens KH and NYN domain
containing (KHNYN), transcript variant 3, mRNA
Length=6175
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 3687 CCTGACTTCTGCCT 3700
> gi|126723686|ref|NM_015299.2| Homo sapiens KH and NYN domain
containing (KHNYN), transcript variant 1, mRNA
Length=6301
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 3815 CCTGACTTCTGCCT 3828
> gi|589908365|ref|NM_001290256.1| Homo sapiens KH and NYN domain
containing (KHNYN), transcript variant 2, mRNA
Length=6240
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 3752 CCTGACTTCTGCCT 3765
> gi|1034586557|ref|XM_011536590.2| PREDICTED: Homo sapiens KH
and NYN domain containing (KHNYN), transcript variant X1, mRNA
Length=6402
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 3921 CCTGACTTCTGCCT 3934
> gi|1034573043|ref|XM_017017551.1| PREDICTED: Homo sapiens beta-1,3-glucuronyltransferase
1 (B3GAT1), transcript variant X4,
mRNA
Length=5349
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 1937 CCTGACTTCTGCCT 1924
> gi|1034571948|ref|XM_017017187.1| PREDICTED: Homo sapiens FAT
atypical cadherin 3 (FAT3), transcript variant X10, mRNA
Length=20804
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CTGACTTCTGCCTT 19
||||||||||||||
Sbjct 1768 CTGACTTCTGCCTT 1781
> gi|1034566103|ref|XM_017015549.1| PREDICTED: Homo sapiens CUGBP,
Elav-like family member 2 (CELF2), transcript variant X8,
mRNA
Length=7669
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 GAACCTGACTTCTGCCTT 19
|||| |||||||||||||
Sbjct 13 GAACATGACTTCTGCCTT 30
> gi|1034566101|ref|XM_017015548.1| PREDICTED: Homo sapiens CUGBP,
Elav-like family member 2 (CELF2), transcript variant X7,
mRNA
Length=9027
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 GAACCTGACTTCTGCCTT 19
|||| |||||||||||||
Sbjct 13 GAACATGACTTCTGCCTT 30
> gi|1034566093|ref|XM_017015544.1| PREDICTED: Homo sapiens CUGBP,
Elav-like family member 2 (CELF2), transcript variant X3,
mRNA
Length=9045
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 GAACCTGACTTCTGCCTT 19
|||| |||||||||||||
Sbjct 13 GAACATGACTTCTGCCTT 30
> gi|1034566097|ref|XM_017015546.1| PREDICTED: Homo sapiens CUGBP,
Elav-like family member 2 (CELF2), transcript variant X5,
mRNA
Length=7681
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 GAACCTGACTTCTGCCTT 19
|||| |||||||||||||
Sbjct 13 GAACATGACTTCTGCCTT 30
> gi|1034566095|ref|XM_017015545.1| PREDICTED: Homo sapiens CUGBP,
Elav-like family member 2 (CELF2), transcript variant X4,
mRNA
Length=9039
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 GAACCTGACTTCTGCCTT 19
|||| |||||||||||||
Sbjct 13 GAACATGACTTCTGCCTT 30
> gi|1034566091|ref|XM_017015543.1| PREDICTED: Homo sapiens CUGBP,
Elav-like family member 2 (CELF2), transcript variant X2,
mRNA
Length=9057
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 GAACCTGACTTCTGCCTT 19
|||| |||||||||||||
Sbjct 13 GAACATGACTTCTGCCTT 30
> gi|1034566127|ref|XM_017015560.1| PREDICTED: Homo sapiens CUGBP,
Elav-like family member 2 (CELF2), transcript variant X22,
mRNA
Length=8980
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 GAACCTGACTTCTGCCTT 19
|||| |||||||||||||
Sbjct 31 GAACATGACTTCTGCCTT 48
> gi|134152679|ref|NM_006561.3| Homo sapiens CUGBP, Elav-like family
member 2 (CELF2), transcript variant 2, mRNA
Length=8005
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 GAACCTGACTTCTGCCTT 19
|||| |||||||||||||
Sbjct 157 GAACATGACTTCTGCCTT 174
> gi|1034663789|ref|XM_017014276.1| PREDICTED: Homo sapiens peptidyl-tRNA
hydrolase 1 homolog (PTRH1), transcript variant X1,
mRNA
Length=1976
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 ACCTGACTTCTGCC 17
||||||||||||||
Sbjct 291 ACCTGACTTCTGCC 304
> gi|1034663794|ref|XM_017014278.1| PREDICTED: Homo sapiens peptidyl-tRNA
hydrolase 1 homolog (PTRH1), transcript variant X4,
mRNA
Length=1780
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 ACCTGACTTCTGCC 17
||||||||||||||
Sbjct 291 ACCTGACTTCTGCC 304
> gi|1034663793|ref|XM_006716955.3| PREDICTED: Homo sapiens peptidyl-tRNA
hydrolase 1 homolog (PTRH1), transcript variant X3,
mRNA
Length=1792
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 ACCTGACTTCTGCC 17
||||||||||||||
Sbjct 291 ACCTGACTTCTGCC 304
> gi|1034663791|ref|XM_017014277.1| PREDICTED: Homo sapiens peptidyl-tRNA
hydrolase 1 homolog (PTRH1), transcript variant X2,
mRNA
Length=1655
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 ACCTGACTTCTGCC 17
||||||||||||||
Sbjct 291 ACCTGACTTCTGCC 304
> gi|1034657033|ref|XM_011516589.2| PREDICTED: Homo sapiens tripartite
motif containing 56 (TRIM56), transcript variant X1,
mRNA
Length=10804
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGACTTCTGCCTTG 20
||||||||||||||
Sbjct 9984 TGACTTCTGCCTTG 9971
> gi|520261937|ref|NM_133339.2| Homo sapiens RAD17 checkpoint clamp
loader component (RAD17), transcript variant 2, mRNA
Length=2634
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 1704 CCTGACTTCTGCCT 1717
> gi|520261372|ref|NM_133340.2| Homo sapiens RAD17 checkpoint clamp
loader component (RAD17), transcript variant 3, mRNA
Length=2667
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 1737 CCTGACTTCTGCCT 1750
> gi|520261474|ref|NM_133341.2| Homo sapiens RAD17 checkpoint clamp
loader component (RAD17), transcript variant 4, mRNA
Length=2593
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 1663 CCTGACTTCTGCCT 1676
> gi|4506382|ref|NM_002873.1| Homo sapiens RAD17 checkpoint clamp
loader component (RAD17), transcript variant 8, mRNA
Length=3164
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 2251 CCTGACTTCTGCCT 2264
> gi|520261541|ref|NM_001278622.1| Homo sapiens RAD17 checkpoint
clamp loader component (RAD17), transcript variant 9, mRNA
Length=3067
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 2146 CCTGACTTCTGCCT 2159
> gi|1034645568|ref|XM_017009680.1| PREDICTED: Homo sapiens RAD17
checkpoint clamp loader component (RAD17), transcript variant
X2, mRNA
Length=2933
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 2020 CCTGACTTCTGCCT 2033
> gi|1034645566|ref|XM_017009679.1| PREDICTED: Homo sapiens RAD17
checkpoint clamp loader component (RAD17), transcript variant
X1, mRNA
Length=2879
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 1966 CCTGACTTCTGCCT 1979
> gi|520261385|ref|NM_133344.2| Homo sapiens RAD17 checkpoint clamp
loader component (RAD17), transcript variant 7, mRNA
Length=2827
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 1906 CCTGACTTCTGCCT 1919
> gi|520261326|ref|NM_133338.2| Homo sapiens RAD17 checkpoint clamp
loader component (RAD17), transcript variant 1, mRNA
Length=3076
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 2147 CCTGACTTCTGCCT 2160
> gi|520261445|ref|NM_133342.2| Homo sapiens RAD17 checkpoint clamp
loader component (RAD17), transcript variant 5, mRNA
Length=3054
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 2124 CCTGACTTCTGCCT 2137
> gi|1034645570|ref|XM_017009681.1| PREDICTED: Homo sapiens RAD17
checkpoint clamp loader component (RAD17), transcript variant
X3, mRNA
Length=2791
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 1878 CCTGACTTCTGCCT 1891
> gi|19718793|ref|NM_133343.1| Homo sapiens RAD17 checkpoint clamp
loader component (RAD17), transcript variant 6, mRNA
Length=3010
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CCTGACTTCTGCCT 18
||||||||||||||
Sbjct 2089 CCTGACTTCTGCCT 2102
> gi|667751629|ref|NR_125404.1| Homo sapiens uncharacterized LOC100505920
(LOC100505920), transcript variant 2, long non-coding
RNA
Length=872
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 GAACCTGACTTCTGCCTT 19
|||| |||||||||||||
Sbjct 20 GAACTTGACTTCTGCCTT 37
> gi|1034630999|ref|XM_017005649.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 11 (SCN11A), transcript
variant X3, mRNA
Length=6835
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GGAACCTGACTTCT 14
||||||||||||||
Sbjct 396 GGAACCTGACTTCT 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2