BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCTTGAATCTCGGTGTCTTTCCTCGAGGAAAGACACCGAGATTCAAGCTTTTTT (evalue = 10)
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034605112|ref|XR_001753309.1| PREDICTED: Homo sapiens prote... 46.1 3e-04
gi|1034605110|ref|XR_001753307.1| PREDICTED: Homo sapiens prote... 46.1 3e-04
gi|1034605102|ref|XM_011525775.2| PREDICTED: Homo sapiens prote... 46.1 3e-04
gi|1034605103|ref|XM_017026105.1| PREDICTED: Homo sapiens prote... 46.1 3e-04
gi|1034605105|ref|XM_011525779.2| PREDICTED: Homo sapiens prote... 46.1 3e-04
gi|1034605108|ref|XM_017026107.1| PREDICTED: Homo sapiens prote... 46.1 3e-04
gi|1034605111|ref|XR_001753308.1| PREDICTED: Homo sapiens prote... 46.1 3e-04
gi|1034605106|ref|XM_017026106.1| PREDICTED: Homo sapiens prote... 46.1 3e-04
gi|767997972|ref|XM_011525776.1| PREDICTED: Homo sapiens protei... 46.1 3e-04
gi|391224432|ref|NM_001042388.2| Homo sapiens protein phosphata... 46.1 3e-04
gi|391224433|ref|NM_005134.3| Homo sapiens protein phosphatase ... 46.1 3e-04
gi|391224434|ref|NR_052003.1| Homo sapiens protein phosphatase ... 46.1 3e-04
gi|1034641521|ref|XM_011532335.2| PREDICTED: Homo sapiens colla... 32.2 4.3
gi|1034641523|ref|XM_017008735.1| PREDICTED: Homo sapiens colla... 32.2 4.3
> gi|1034605112|ref|XR_001753309.1| PREDICTED: Homo sapiens protein
phosphatase 4 regulatory subunit 1 (PPP4R1), transcript
variant X9, misc_RNA
Length=4002
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 3061 GCTTGAATCTCGGTGTCTTTCCT 3083
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 3083 AGGAAAGACACCGAGATTCAAGC 3061
> gi|1034605110|ref|XR_001753307.1| PREDICTED: Homo sapiens protein
phosphatase 4 regulatory subunit 1 (PPP4R1), transcript
variant X7, misc_RNA
Length=4219
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 3231 GCTTGAATCTCGGTGTCTTTCCT 3253
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 3253 AGGAAAGACACCGAGATTCAAGC 3231
> gi|1034605102|ref|XM_011525775.2| PREDICTED: Homo sapiens protein
phosphatase 4 regulatory subunit 1 (PPP4R1), transcript
variant X1, mRNA
Length=4095
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 3106 GCTTGAATCTCGGTGTCTTTCCT 3128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 3128 AGGAAAGACACCGAGATTCAAGC 3106
> gi|1034605103|ref|XM_017026105.1| PREDICTED: Homo sapiens protein
phosphatase 4 regulatory subunit 1 (PPP4R1), transcript
variant X3, mRNA
Length=3936
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 2947 GCTTGAATCTCGGTGTCTTTCCT 2969
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 2969 AGGAAAGACACCGAGATTCAAGC 2947
> gi|1034605105|ref|XM_011525779.2| PREDICTED: Homo sapiens protein
phosphatase 4 regulatory subunit 1 (PPP4R1), transcript
variant X4, mRNA
Length=3762
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 2773 GCTTGAATCTCGGTGTCTTTCCT 2795
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 2795 AGGAAAGACACCGAGATTCAAGC 2773
> gi|1034605108|ref|XM_017026107.1| PREDICTED: Homo sapiens protein
phosphatase 4 regulatory subunit 1 (PPP4R1), transcript
variant X6, mRNA
Length=3790
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 2799 GCTTGAATCTCGGTGTCTTTCCT 2821
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 2821 AGGAAAGACACCGAGATTCAAGC 2799
> gi|1034605111|ref|XR_001753308.1| PREDICTED: Homo sapiens protein
phosphatase 4 regulatory subunit 1 (PPP4R1), transcript
variant X8, misc_RNA
Length=4007
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 3016 GCTTGAATCTCGGTGTCTTTCCT 3038
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 3038 AGGAAAGACACCGAGATTCAAGC 3016
> gi|1034605106|ref|XM_017026106.1| PREDICTED: Homo sapiens protein
phosphatase 4 regulatory subunit 1 (PPP4R1), transcript
variant X5, mRNA
Length=3775
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 2784 GCTTGAATCTCGGTGTCTTTCCT 2806
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 2806 AGGAAAGACACCGAGATTCAAGC 2784
> gi|767997972|ref|XM_011525776.1| PREDICTED: Homo sapiens protein
phosphatase 4 regulatory subunit 1 (PPP4R1), transcript
variant X2, mRNA
Length=3961
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 2970 GCTTGAATCTCGGTGTCTTTCCT 2992
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 2992 AGGAAAGACACCGAGATTCAAGC 2970
> gi|391224432|ref|NM_001042388.2| Homo sapiens protein phosphatase
4 regulatory subunit 1 (PPP4R1), transcript variant 1,
mRNA
Length=3980
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 2980 GCTTGAATCTCGGTGTCTTTCCT 3002
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 3002 AGGAAAGACACCGAGATTCAAGC 2980
> gi|391224433|ref|NM_005134.3| Homo sapiens protein phosphatase
4 regulatory subunit 1 (PPP4R1), transcript variant 2, mRNA
Length=3929
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 2929 GCTTGAATCTCGGTGTCTTTCCT 2951
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 2951 AGGAAAGACACCGAGATTCAAGC 2929
> gi|391224434|ref|NR_052003.1| Homo sapiens protein phosphatase
4 regulatory subunit 1 (PPP4R1), transcript variant 3, non-coding
RNA
Length=3947
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 GCTTGAATCTCGGTGTCTTTCCT 23
|||||||||||||||||||||||
Sbjct 2947 GCTTGAATCTCGGTGTCTTTCCT 2969
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 26 AGGAAAGACACCGAGATTCAAGC 48
|||||||||||||||||||||||
Sbjct 2969 AGGAAAGACACCGAGATTCAAGC 2947
> gi|1034641521|ref|XM_011532335.2| PREDICTED: Homo sapiens collagen
type XXV alpha 1 (COL25A1), transcript variant X3, mRNA
Length=7612
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 28 GAAAGACACCGAGATT 43
||||||||||||||||
Sbjct 252 GAAAGACACCGAGATT 267
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 6 AATCTCGGTGTCTTTC 21
||||||||||||||||
Sbjct 267 AATCTCGGTGTCTTTC 252
> gi|1034641523|ref|XM_017008735.1| PREDICTED: Homo sapiens collagen
type XXV alpha 1 (COL25A1), transcript variant X5, mRNA
Length=7559
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 28 GAAAGACACCGAGATT 43
||||||||||||||||
Sbjct 253 GAAAGACACCGAGATT 268
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 6 AATCTCGGTGTCTTTC 21
||||||||||||||||
Sbjct 268 AATCTCGGTGTCTTTC 253
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21612390383
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2