BLASTN 2.4.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: rna.fa 176,426 sequences; 587,117,901 total letters Query= GCTGTTTATCTTCCATGCAAACTCGAGTTTGCATGGAAGATAAACAGCTTTTT (evalue = 10) Length=53 Score E Sequences producing significant alignments: (Bits) Value gi|283837901|ref|NM_017520.3| Homo sapiens M-phase phosphoprote... 46.1 3e-04 gi|1034584552|ref|XR_941609.2| PREDICTED: Homo sapiens M-phase ... 46.1 3e-04 gi|1034584551|ref|XR_001749584.1| PREDICTED: Homo sapiens M-pha... 46.1 3e-04 gi|1034584550|ref|XM_011535124.2| PREDICTED: Homo sapiens M-pha... 46.1 3e-04 gi|1034584553|ref|XR_001749585.1| PREDICTED: Homo sapiens M-pha... 46.1 3e-04 gi|1034584554|ref|XR_001749586.1| PREDICTED: Homo sapiens M-pha... 46.1 3e-04 gi|1034615966|ref|XM_017004728.1| PREDICTED: Homo sapiens neuro... 34.2 1.1 gi|1034615964|ref|XM_011511662.2| PREDICTED: Homo sapiens neuro... 34.2 1.1 gi|1034615963|ref|XM_011511660.2| PREDICTED: Homo sapiens neuro... 34.2 1.1 gi|1034615960|ref|XM_011511659.2| PREDICTED: Homo sapiens neuro... 34.2 1.1 gi|224451123|ref|NM_001114132.1| Homo sapiens neurobeachin like... 34.2 1.1 gi|1034615965|ref|XM_011511663.2| PREDICTED: Homo sapiens neuro... 34.2 1.1 gi|1034615962|ref|XM_005246787.3| PREDICTED: Homo sapiens neuro... 34.2 1.1 gi|1034615958|ref|XM_006712698.3| PREDICTED: Homo sapiens neuro... 34.2 1.1 gi|1034615961|ref|XM_006712699.3| PREDICTED: Homo sapiens neuro... 34.2 1.1 gi|1034615959|ref|XM_011511658.2| PREDICTED: Homo sapiens neuro... 34.2 1.1 gi|1034633661|ref|XR_001740165.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 gi|1034633659|ref|XM_017006537.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 gi|1034633658|ref|XR_001740164.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 gi|1034633656|ref|XM_017006536.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 gi|1034633655|ref|XR_001740163.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 gi|1034633653|ref|XM_017006535.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 gi|1034633647|ref|XM_017006532.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 gi|1034633620|ref|XM_017006519.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 gi|1034633602|ref|XM_017006510.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 gi|1034633624|ref|XR_001740162.1| PREDICTED: Homo sapiens ssu-2... 32.2 4.2 > gi|283837901|ref|NM_017520.3| Homo sapiens M-phase phosphoprotein 8 (MPHOSPH8), mRNA Length=4281 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1 GCTGTTTATCTTCCATGCAAACT 23 ||||||||||||||||||||||| Sbjct 2444 GCTGTTTATCTTCCATGCAAACT 2466 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 26 AGTTTGCATGGAAGATAAACAGC 48 ||||||||||||||||||||||| Sbjct 2466 AGTTTGCATGGAAGATAAACAGC 2444 > gi|1034584552|ref|XR_941609.2| PREDICTED: Homo sapiens M-phase phosphoprotein 8 (MPHOSPH8), transcript variant X3, misc_RNA Length=2742 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1 GCTGTTTATCTTCCATGCAAACT 23 ||||||||||||||||||||||| Sbjct 2445 GCTGTTTATCTTCCATGCAAACT 2467 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 26 AGTTTGCATGGAAGATAAACAGC 48 ||||||||||||||||||||||| Sbjct 2467 AGTTTGCATGGAAGATAAACAGC 2445 > gi|1034584551|ref|XR_001749584.1| PREDICTED: Homo sapiens M-phase phosphoprotein 8 (MPHOSPH8), transcript variant X2, misc_RNA Length=4613 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1 GCTGTTTATCTTCCATGCAAACT 23 ||||||||||||||||||||||| Sbjct 2445 GCTGTTTATCTTCCATGCAAACT 2467 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 26 AGTTTGCATGGAAGATAAACAGC 48 ||||||||||||||||||||||| Sbjct 2467 AGTTTGCATGGAAGATAAACAGC 2445 > gi|1034584550|ref|XM_011535124.2| PREDICTED: Homo sapiens M-phase phosphoprotein 8 (MPHOSPH8), transcript variant X1, mRNA Length=4376 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1 GCTGTTTATCTTCCATGCAAACT 23 ||||||||||||||||||||||| Sbjct 2445 GCTGTTTATCTTCCATGCAAACT 2467 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 26 AGTTTGCATGGAAGATAAACAGC 48 ||||||||||||||||||||||| Sbjct 2467 AGTTTGCATGGAAGATAAACAGC 2445 > gi|1034584553|ref|XR_001749585.1| PREDICTED: Homo sapiens M-phase phosphoprotein 8 (MPHOSPH8), transcript variant X4, misc_RNA Length=4420 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1 GCTGTTTATCTTCCATGCAAACT 23 ||||||||||||||||||||||| Sbjct 2614 GCTGTTTATCTTCCATGCAAACT 2636 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 26 AGTTTGCATGGAAGATAAACAGC 48 ||||||||||||||||||||||| Sbjct 2636 AGTTTGCATGGAAGATAAACAGC 2614 > gi|1034584554|ref|XR_001749586.1| PREDICTED: Homo sapiens M-phase phosphoprotein 8 (MPHOSPH8), transcript variant X5, misc_RNA Length=4786 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1 GCTGTTTATCTTCCATGCAAACT 23 ||||||||||||||||||||||| Sbjct 2614 GCTGTTTATCTTCCATGCAAACT 2636 Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 26 AGTTTGCATGGAAGATAAACAGC 48 ||||||||||||||||||||||| Sbjct 2636 AGTTTGCATGGAAGATAAACAGC 2614 > gi|1034615966|ref|XM_017004728.1| PREDICTED: Homo sapiens neurobeachin like 1 (NBEAL1), transcript variant X9, mRNA Length=6661 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 1059 GTTTGCATGGAAGATTAACAG 1079 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 1079 CTGTTAATCTTCCATGCAAAC 1059 > gi|1034615964|ref|XM_011511662.2| PREDICTED: Homo sapiens neurobeachin like 1 (NBEAL1), transcript variant X7, mRNA Length=7263 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 1661 GTTTGCATGGAAGATTAACAG 1681 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 1681 CTGTTAATCTTCCATGCAAAC 1661 > gi|1034615963|ref|XM_011511660.2| PREDICTED: Homo sapiens neurobeachin like 1 (NBEAL1), transcript variant X6, mRNA Length=7928 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 2326 GTTTGCATGGAAGATTAACAG 2346 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 2346 CTGTTAATCTTCCATGCAAAC 2326 > gi|1034615960|ref|XM_011511659.2| PREDICTED: Homo sapiens neurobeachin like 1 (NBEAL1), transcript variant X3, mRNA Length=8606 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 3004 GTTTGCATGGAAGATTAACAG 3024 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 3024 CTGTTAATCTTCCATGCAAAC 3004 > gi|224451123|ref|NM_001114132.1| Homo sapiens neurobeachin like 1 (NBEAL1), mRNA Length=9058 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 2879 GTTTGCATGGAAGATTAACAG 2899 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 2899 CTGTTAATCTTCCATGCAAAC 2879 > gi|1034615965|ref|XM_011511663.2| PREDICTED: Homo sapiens neurobeachin like 1 (NBEAL1), transcript variant X8, mRNA Length=7959 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 2982 GTTTGCATGGAAGATTAACAG 3002 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 3002 CTGTTAATCTTCCATGCAAAC 2982 > gi|1034615962|ref|XM_005246787.3| PREDICTED: Homo sapiens neurobeachin like 1 (NBEAL1), transcript variant X5, mRNA Length=8507 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 2905 GTTTGCATGGAAGATTAACAG 2925 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 2925 CTGTTAATCTTCCATGCAAAC 2905 > gi|1034615958|ref|XM_006712698.3| PREDICTED: Homo sapiens neurobeachin like 1 (NBEAL1), transcript variant X1, mRNA Length=8594 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 2992 GTTTGCATGGAAGATTAACAG 3012 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 3012 CTGTTAATCTTCCATGCAAAC 2992 > gi|1034615961|ref|XM_006712699.3| PREDICTED: Homo sapiens neurobeachin like 1 (NBEAL1), transcript variant X4, mRNA Length=16371 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 2992 GTTTGCATGGAAGATTAACAG 3012 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 3012 CTGTTAATCTTCCATGCAAAC 2992 > gi|1034615959|ref|XM_011511658.2| PREDICTED: Homo sapiens neurobeachin like 1 (NBEAL1), transcript variant X2, mRNA Length=8549 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 27 GTTTGCATGGAAGATAAACAG 47 ||||||||||||||| ||||| Sbjct 2947 GTTTGCATGGAAGATTAACAG 2967 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 CTGTTTATCTTCCATGCAAAC 22 ||||| ||||||||||||||| Sbjct 2967 CTGTTAATCTTCCATGCAAAC 2947 > gi|1034633661|ref|XR_001740165.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X33, misc_RNA Length=6442 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 3341 TGTTTATCTTCCATGC 3356 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 3356 GCATGGAAGATAAACA 3341 > gi|1034633659|ref|XM_017006537.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X32, mRNA Length=6356 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 3341 TGTTTATCTTCCATGC 3356 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 3356 GCATGGAAGATAAACA 3341 > gi|1034633658|ref|XR_001740164.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X31, misc_RNA Length=6574 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 3340 TGTTTATCTTCCATGC 3355 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 3355 GCATGGAAGATAAACA 3340 > gi|1034633656|ref|XM_017006536.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X30, mRNA Length=6857 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 3341 TGTTTATCTTCCATGC 3356 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 3356 GCATGGAAGATAAACA 3341 > gi|1034633655|ref|XR_001740163.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X29, misc_RNA Length=6587 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 3341 TGTTTATCTTCCATGC 3356 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 3356 GCATGGAAGATAAACA 3341 > gi|1034633653|ref|XM_017006535.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X28, mRNA Length=6564 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 3338 TGTTTATCTTCCATGC 3353 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 3353 GCATGGAAGATAAACA 3338 > gi|1034633647|ref|XM_017006532.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X25, mRNA Length=6641 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 3062 TGTTTATCTTCCATGC 3077 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 3077 GCATGGAAGATAAACA 3062 > gi|1034633620|ref|XM_017006519.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X11, mRNA Length=6062 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 2203 TGTTTATCTTCCATGC 2218 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 2218 GCATGGAAGATAAACA 2203 > gi|1034633602|ref|XM_017006510.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X1, mRNA Length=6117 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 2204 TGTTTATCTTCCATGC 2219 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 2219 GCATGGAAGATAAACA 2204 > gi|1034633624|ref|XR_001740162.1| PREDICTED: Homo sapiens ssu-2 homolog (C. elegans) (SSUH2), transcript variant X13, misc_RNA Length=6221 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 3 TGTTTATCTTCCATGC 18 |||||||||||||||| Sbjct 2208 TGTTTATCTTCCATGC 2223 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 31 GCATGGAAGATAAACA 46 |||||||||||||||| Sbjct 2223 GCATGGAAGATAAACA 2208 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 21028271724 Database: rna.fa Posted date: Jan 6, 2017 3:58 PM Number of letters in database: 587,117,901 Number of sequences in database: 176,426 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2