BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= GCTGTTTATCTTCCATGCAAACTCGAGTTTGCATGGAAGATAAACAGCTTTTT (evalue = 10)

Length=53
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|283837901|ref|NM_017520.3| Homo sapiens M-phase phosphoprote...  46.1    3e-04
  gi|1034584552|ref|XR_941609.2| PREDICTED: Homo sapiens M-phase ...  46.1    3e-04
  gi|1034584551|ref|XR_001749584.1| PREDICTED: Homo sapiens M-pha...  46.1    3e-04
  gi|1034584550|ref|XM_011535124.2| PREDICTED: Homo sapiens M-pha...  46.1    3e-04
  gi|1034584553|ref|XR_001749585.1| PREDICTED: Homo sapiens M-pha...  46.1    3e-04
  gi|1034584554|ref|XR_001749586.1| PREDICTED: Homo sapiens M-pha...  46.1    3e-04
  gi|1034615966|ref|XM_017004728.1| PREDICTED: Homo sapiens neuro...  34.2    1.1  
  gi|1034615964|ref|XM_011511662.2| PREDICTED: Homo sapiens neuro...  34.2    1.1  
  gi|1034615963|ref|XM_011511660.2| PREDICTED: Homo sapiens neuro...  34.2    1.1  
  gi|1034615960|ref|XM_011511659.2| PREDICTED: Homo sapiens neuro...  34.2    1.1  
  gi|224451123|ref|NM_001114132.1| Homo sapiens neurobeachin like...  34.2    1.1  
  gi|1034615965|ref|XM_011511663.2| PREDICTED: Homo sapiens neuro...  34.2    1.1  
  gi|1034615962|ref|XM_005246787.3| PREDICTED: Homo sapiens neuro...  34.2    1.1  
  gi|1034615958|ref|XM_006712698.3| PREDICTED: Homo sapiens neuro...  34.2    1.1  
  gi|1034615961|ref|XM_006712699.3| PREDICTED: Homo sapiens neuro...  34.2    1.1  
  gi|1034615959|ref|XM_011511658.2| PREDICTED: Homo sapiens neuro...  34.2    1.1  
  gi|1034633661|ref|XR_001740165.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  
  gi|1034633659|ref|XM_017006537.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  
  gi|1034633658|ref|XR_001740164.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  
  gi|1034633656|ref|XM_017006536.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  
  gi|1034633655|ref|XR_001740163.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  
  gi|1034633653|ref|XM_017006535.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  
  gi|1034633647|ref|XM_017006532.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  
  gi|1034633620|ref|XM_017006519.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  
  gi|1034633602|ref|XM_017006510.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  
  gi|1034633624|ref|XR_001740162.1| PREDICTED: Homo sapiens ssu-2...  32.2    4.2  


> gi|283837901|ref|NM_017520.3| Homo sapiens M-phase phosphoprotein 
8 (MPHOSPH8), mRNA
Length=4281

 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1     GCTGTTTATCTTCCATGCAAACT  23
             |||||||||||||||||||||||
Sbjct  2444  GCTGTTTATCTTCCATGCAAACT  2466


 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  26    AGTTTGCATGGAAGATAAACAGC  48
             |||||||||||||||||||||||
Sbjct  2466  AGTTTGCATGGAAGATAAACAGC  2444


> gi|1034584552|ref|XR_941609.2| PREDICTED: Homo sapiens M-phase 
phosphoprotein 8 (MPHOSPH8), transcript variant X3, misc_RNA
Length=2742

 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1     GCTGTTTATCTTCCATGCAAACT  23
             |||||||||||||||||||||||
Sbjct  2445  GCTGTTTATCTTCCATGCAAACT  2467


 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  26    AGTTTGCATGGAAGATAAACAGC  48
             |||||||||||||||||||||||
Sbjct  2467  AGTTTGCATGGAAGATAAACAGC  2445


> gi|1034584551|ref|XR_001749584.1| PREDICTED: Homo sapiens M-phase 
phosphoprotein 8 (MPHOSPH8), transcript variant X2, misc_RNA
Length=4613

 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1     GCTGTTTATCTTCCATGCAAACT  23
             |||||||||||||||||||||||
Sbjct  2445  GCTGTTTATCTTCCATGCAAACT  2467


 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  26    AGTTTGCATGGAAGATAAACAGC  48
             |||||||||||||||||||||||
Sbjct  2467  AGTTTGCATGGAAGATAAACAGC  2445


> gi|1034584550|ref|XM_011535124.2| PREDICTED: Homo sapiens M-phase 
phosphoprotein 8 (MPHOSPH8), transcript variant X1, mRNA
Length=4376

 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1     GCTGTTTATCTTCCATGCAAACT  23
             |||||||||||||||||||||||
Sbjct  2445  GCTGTTTATCTTCCATGCAAACT  2467


 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  26    AGTTTGCATGGAAGATAAACAGC  48
             |||||||||||||||||||||||
Sbjct  2467  AGTTTGCATGGAAGATAAACAGC  2445


> gi|1034584553|ref|XR_001749585.1| PREDICTED: Homo sapiens M-phase 
phosphoprotein 8 (MPHOSPH8), transcript variant X4, misc_RNA
Length=4420

 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1     GCTGTTTATCTTCCATGCAAACT  23
             |||||||||||||||||||||||
Sbjct  2614  GCTGTTTATCTTCCATGCAAACT  2636


 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  26    AGTTTGCATGGAAGATAAACAGC  48
             |||||||||||||||||||||||
Sbjct  2636  AGTTTGCATGGAAGATAAACAGC  2614


> gi|1034584554|ref|XR_001749586.1| PREDICTED: Homo sapiens M-phase 
phosphoprotein 8 (MPHOSPH8), transcript variant X5, misc_RNA
Length=4786

 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  1     GCTGTTTATCTTCCATGCAAACT  23
             |||||||||||||||||||||||
Sbjct  2614  GCTGTTTATCTTCCATGCAAACT  2636


 Score = 46.1 bits (23),  Expect = 3e-04
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  26    AGTTTGCATGGAAGATAAACAGC  48
             |||||||||||||||||||||||
Sbjct  2636  AGTTTGCATGGAAGATAAACAGC  2614


> gi|1034615966|ref|XM_017004728.1| PREDICTED: Homo sapiens neurobeachin 
like 1 (NBEAL1), transcript variant X9, mRNA
Length=6661

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  1059  GTTTGCATGGAAGATTAACAG  1079


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  1079  CTGTTAATCTTCCATGCAAAC  1059


> gi|1034615964|ref|XM_011511662.2| PREDICTED: Homo sapiens neurobeachin 
like 1 (NBEAL1), transcript variant X7, mRNA
Length=7263

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  1661  GTTTGCATGGAAGATTAACAG  1681


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  1681  CTGTTAATCTTCCATGCAAAC  1661


> gi|1034615963|ref|XM_011511660.2| PREDICTED: Homo sapiens neurobeachin 
like 1 (NBEAL1), transcript variant X6, mRNA
Length=7928

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  2326  GTTTGCATGGAAGATTAACAG  2346


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  2346  CTGTTAATCTTCCATGCAAAC  2326


> gi|1034615960|ref|XM_011511659.2| PREDICTED: Homo sapiens neurobeachin 
like 1 (NBEAL1), transcript variant X3, mRNA
Length=8606

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  3004  GTTTGCATGGAAGATTAACAG  3024


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  3024  CTGTTAATCTTCCATGCAAAC  3004


> gi|224451123|ref|NM_001114132.1| Homo sapiens neurobeachin like 
1 (NBEAL1), mRNA
Length=9058

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  2879  GTTTGCATGGAAGATTAACAG  2899


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  2899  CTGTTAATCTTCCATGCAAAC  2879


> gi|1034615965|ref|XM_011511663.2| PREDICTED: Homo sapiens neurobeachin 
like 1 (NBEAL1), transcript variant X8, mRNA
Length=7959

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  2982  GTTTGCATGGAAGATTAACAG  3002


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  3002  CTGTTAATCTTCCATGCAAAC  2982


> gi|1034615962|ref|XM_005246787.3| PREDICTED: Homo sapiens neurobeachin 
like 1 (NBEAL1), transcript variant X5, mRNA
Length=8507

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  2905  GTTTGCATGGAAGATTAACAG  2925


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  2925  CTGTTAATCTTCCATGCAAAC  2905


> gi|1034615958|ref|XM_006712698.3| PREDICTED: Homo sapiens neurobeachin 
like 1 (NBEAL1), transcript variant X1, mRNA
Length=8594

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  2992  GTTTGCATGGAAGATTAACAG  3012


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  3012  CTGTTAATCTTCCATGCAAAC  2992


> gi|1034615961|ref|XM_006712699.3| PREDICTED: Homo sapiens neurobeachin 
like 1 (NBEAL1), transcript variant X4, mRNA
Length=16371

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  2992  GTTTGCATGGAAGATTAACAG  3012


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  3012  CTGTTAATCTTCCATGCAAAC  2992


> gi|1034615959|ref|XM_011511658.2| PREDICTED: Homo sapiens neurobeachin 
like 1 (NBEAL1), transcript variant X2, mRNA
Length=8549

 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  27    GTTTGCATGGAAGATAAACAG  47
             ||||||||||||||| |||||
Sbjct  2947  GTTTGCATGGAAGATTAACAG  2967


 Score = 34.2 bits (17),  Expect = 1.1
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  2     CTGTTTATCTTCCATGCAAAC  22
             ||||| |||||||||||||||
Sbjct  2967  CTGTTAATCTTCCATGCAAAC  2947


> gi|1034633661|ref|XR_001740165.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X33, misc_RNA
Length=6442

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  3341  TGTTTATCTTCCATGC  3356


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  3356  GCATGGAAGATAAACA  3341


> gi|1034633659|ref|XM_017006537.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X32, mRNA
Length=6356

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  3341  TGTTTATCTTCCATGC  3356


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  3356  GCATGGAAGATAAACA  3341


> gi|1034633658|ref|XR_001740164.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X31, misc_RNA
Length=6574

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  3340  TGTTTATCTTCCATGC  3355


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  3355  GCATGGAAGATAAACA  3340


> gi|1034633656|ref|XM_017006536.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X30, mRNA
Length=6857

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  3341  TGTTTATCTTCCATGC  3356


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  3356  GCATGGAAGATAAACA  3341


> gi|1034633655|ref|XR_001740163.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X29, misc_RNA
Length=6587

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  3341  TGTTTATCTTCCATGC  3356


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  3356  GCATGGAAGATAAACA  3341


> gi|1034633653|ref|XM_017006535.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X28, mRNA
Length=6564

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  3338  TGTTTATCTTCCATGC  3353


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  3353  GCATGGAAGATAAACA  3338


> gi|1034633647|ref|XM_017006532.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X25, mRNA
Length=6641

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  3062  TGTTTATCTTCCATGC  3077


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  3077  GCATGGAAGATAAACA  3062


> gi|1034633620|ref|XM_017006519.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X11, mRNA
Length=6062

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  2203  TGTTTATCTTCCATGC  2218


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  2218  GCATGGAAGATAAACA  2203


> gi|1034633602|ref|XM_017006510.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X1, mRNA
Length=6117

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  2204  TGTTTATCTTCCATGC  2219


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  2219  GCATGGAAGATAAACA  2204


> gi|1034633624|ref|XR_001740162.1| PREDICTED: Homo sapiens ssu-2 
homolog (C. elegans) (SSUH2), transcript variant X13, misc_RNA
Length=6221

 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3     TGTTTATCTTCCATGC  18
             ||||||||||||||||
Sbjct  2208  TGTTTATCTTCCATGC  2223


 Score = 32.2 bits (16),  Expect = 4.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  31    GCATGGAAGATAAACA  46
             ||||||||||||||||
Sbjct  2223  GCATGGAAGATAAACA  2208



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 21028271724


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2