BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= GCTGTTAATGCTTGTCTATAACTCGAGTTATAGACAAGCATTAACAGCTTTTTT (evalue = 10)

Length=54
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|1034599518|ref|XM_017024574.1| PREDICTED: Homo sapiens immat...  44.1    0.001
  gi|737676316|ref|NM_001303265.1| Homo sapiens immature colon ca...  44.1    0.001
  gi|737676268|ref|NM_001545.2| Homo sapiens immature colon carci...  44.1    0.001


> gi|1034599518|ref|XM_017024574.1| PREDICTED: Homo sapiens immature 
colon carcinoma transcript 1 (ICT1), transcript variant 
X1, mRNA
Length=893

 Score = 44.1 bits (22),  Expect = 0.001
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1    GCTGTTAATGCTTGTCTATAAC  22
            ||||||||||||||||||||||
Sbjct  735  GCTGTTAATGCTTGTCTATAAC  756


 Score = 44.1 bits (22),  Expect = 0.001
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  27   GTTATAGACAAGCATTAACAGC  48
            ||||||||||||||||||||||
Sbjct  756  GTTATAGACAAGCATTAACAGC  735


> gi|737676316|ref|NM_001303265.1| Homo sapiens immature colon 
carcinoma transcript 1 (ICT1), transcript variant 2, mRNA
Length=909

 Score = 44.1 bits (22),  Expect = 0.001
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1    GCTGTTAATGCTTGTCTATAAC  22
            ||||||||||||||||||||||
Sbjct  737  GCTGTTAATGCTTGTCTATAAC  758


 Score = 44.1 bits (22),  Expect = 0.001
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  27   GTTATAGACAAGCATTAACAGC  48
            ||||||||||||||||||||||
Sbjct  758  GTTATAGACAAGCATTAACAGC  737


> gi|737676268|ref|NM_001545.2| Homo sapiens immature colon carcinoma 
transcript 1 (ICT1), transcript variant 1, mRNA
Length=914

 Score = 44.1 bits (22),  Expect = 0.001
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1    GCTGTTAATGCTTGTCTATAAC  22
            ||||||||||||||||||||||
Sbjct  742  GCTGTTAATGCTTGTCTATAAC  763


 Score = 44.1 bits (22),  Expect = 0.001
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  27   GTTATAGACAAGCATTAACAGC  48
            ||||||||||||||||||||||
Sbjct  763  GTTATAGACAAGCATTAACAGC  742



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 21612390383


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2