BLASTN 2.4.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: rna.fa 176,426 sequences; 587,117,901 total letters Query= GCTGTTAATGCTTGTCTATAACTCGAGTTATAGACAAGCATTAACAGCTTTTTT (evalue = 10) Length=54 Score E Sequences producing significant alignments: (Bits) Value gi|1034599518|ref|XM_017024574.1| PREDICTED: Homo sapiens immat... 44.1 0.001 gi|737676316|ref|NM_001303265.1| Homo sapiens immature colon ca... 44.1 0.001 gi|737676268|ref|NM_001545.2| Homo sapiens immature colon carci... 44.1 0.001 > gi|1034599518|ref|XM_017024574.1| PREDICTED: Homo sapiens immature colon carcinoma transcript 1 (ICT1), transcript variant X1, mRNA Length=893 Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 1 GCTGTTAATGCTTGTCTATAAC 22 |||||||||||||||||||||| Sbjct 735 GCTGTTAATGCTTGTCTATAAC 756 Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 27 GTTATAGACAAGCATTAACAGC 48 |||||||||||||||||||||| Sbjct 756 GTTATAGACAAGCATTAACAGC 735 > gi|737676316|ref|NM_001303265.1| Homo sapiens immature colon carcinoma transcript 1 (ICT1), transcript variant 2, mRNA Length=909 Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 1 GCTGTTAATGCTTGTCTATAAC 22 |||||||||||||||||||||| Sbjct 737 GCTGTTAATGCTTGTCTATAAC 758 Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 27 GTTATAGACAAGCATTAACAGC 48 |||||||||||||||||||||| Sbjct 758 GTTATAGACAAGCATTAACAGC 737 > gi|737676268|ref|NM_001545.2| Homo sapiens immature colon carcinoma transcript 1 (ICT1), transcript variant 1, mRNA Length=914 Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 1 GCTGTTAATGCTTGTCTATAAC 22 |||||||||||||||||||||| Sbjct 742 GCTGTTAATGCTTGTCTATAAC 763 Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 27 GTTATAGACAAGCATTAACAGC 48 |||||||||||||||||||||| Sbjct 763 GTTATAGACAAGCATTAACAGC 742 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 21612390383 Database: rna.fa Posted date: Jan 6, 2017 3:58 PM Number of letters in database: 587,117,901 Number of sequences in database: 176,426 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2