BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCTCAGATGCATCAGTTCCTTCTCGAGAAGGAACTGATGCATCTGAGCTTTTTT (evalue = 10)
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034581853|ref|XM_017020027.1| PREDICTED: Homo sapiens hydro... 42.1 0.005
gi|1034581845|ref|XM_011538841.2| PREDICTED: Homo sapiens hydro... 42.1 0.005
gi|1034581848|ref|XM_011538844.2| PREDICTED: Homo sapiens hydro... 42.1 0.005
gi|767975572|ref|XM_011538845.1| PREDICTED: Homo sapiens hydrog... 42.1 0.005
gi|767975558|ref|XM_011538838.1| PREDICTED: Homo sapiens hydrog... 42.1 0.005
gi|1034581846|ref|XM_011538840.2| PREDICTED: Homo sapiens hydro... 42.1 0.005
gi|1034581851|ref|XM_005253948.2| PREDICTED: Homo sapiens hydro... 42.1 0.005
gi|1034581844|ref|XM_011538839.2| PREDICTED: Homo sapiens hydro... 42.1 0.005
gi|1034581847|ref|XM_011538842.2| PREDICTED: Homo sapiens hydro... 42.1 0.005
gi|767975576|ref|XM_011538847.1| PREDICTED: Homo sapiens hydrog... 42.1 0.005
gi|1034581849|ref|XM_017020026.1| PREDICTED: Homo sapiens hydro... 42.1 0.005
gi|1034581852|ref|XM_011538846.2| PREDICTED: Homo sapiens hydro... 42.1 0.005
gi|374088167|ref|NM_032369.3| Homo sapiens hydrogen voltage gat... 42.1 0.005
gi|91992152|ref|NM_001040107.1| Homo sapiens hydrogen voltage g... 42.1 0.005
gi|374088169|ref|NM_001256413.1| Homo sapiens hydrogen voltage ... 42.1 0.005
gi|1034581592|ref|XM_017019967.1| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581590|ref|XM_017019966.1| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581586|ref|XM_017019965.1| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581589|ref|XM_006719599.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581598|ref|XM_017019969.1| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581583|ref|XM_005253935.3| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581582|ref|XM_005253934.3| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581600|ref|XR_243022.3| PREDICTED: Homo sapiens tectonic... 42.1 0.005
gi|1034581579|ref|XM_011538738.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581581|ref|XR_243021.3| PREDICTED: Homo sapiens tectonic... 42.1 0.005
gi|1034581580|ref|XR_429116.2| PREDICTED: Homo sapiens tectonic... 42.1 0.005
gi|1034581575|ref|XM_011538737.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581576|ref|XR_944717.2| PREDICTED: Homo sapiens tectonic... 42.1 0.005
gi|1034581572|ref|XM_011538733.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581574|ref|XM_006719594.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|767975302|ref|XM_011538735.1| PREDICTED: Homo sapiens tecton... 42.1 0.005
gi|1034581577|ref|XM_017019964.1| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581594|ref|XM_006719597.3| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581584|ref|XM_006719595.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581573|ref|XM_011538734.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581588|ref|XM_006719598.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581585|ref|XM_006719596.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581597|ref|XM_006719600.2| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|1034581595|ref|XM_017019968.1| PREDICTED: Homo sapiens tecto... 42.1 0.005
gi|985567544|ref|NM_001319680.1| Homo sapiens tectonic family m... 42.1 0.005
gi|291190740|ref|NM_001082537.2| Homo sapiens tectonic family m... 42.1 0.005
gi|291190743|ref|NM_001082538.2| Homo sapiens tectonic family m... 42.1 0.005
gi|291190746|ref|NM_024549.5| Homo sapiens tectonic family memb... 42.1 0.005
gi|985567548|ref|NM_001319681.1| Homo sapiens tectonic family m... 42.1 0.005
gi|291190754|ref|NM_001173976.1| Homo sapiens tectonic family m... 42.1 0.005
gi|985567543|ref|NM_001173975.2| Homo sapiens tectonic family m... 42.1 0.005
gi|985567561|ref|NR_135088.1| Homo sapiens tectonic family memb... 42.1 0.005
gi|335353781|ref|NM_001242502.1| Homo sapiens deiodinase, iodot... 36.2 0.28
gi|335353779|ref|NM_001007023.3| Homo sapiens deiodinase, iodot... 36.2 0.28
gi|335353783|ref|NM_001242503.1| Homo sapiens deiodinase, iodot... 36.2 0.28
gi|335883180|ref|NM_013989.4| Homo sapiens deiodinase, iodothyr... 36.2 0.28
gi|335353780|ref|NM_000793.5| Homo sapiens deiodinase, iodothyr... 36.2 0.28
gi|214831265|ref|NM_178013.3| Homo sapiens proline rich membran... 34.2 1.1
gi|1034586209|ref|XM_011536456.2| PREDICTED: Homo sapiens proli... 34.2 1.1
gi|1034653842|ref|XM_006715835.2| PREDICTED: Homo sapiens cycli... 34.2 1.1
gi|223718130|ref|NM_001259.6| Homo sapiens cyclin-dependent kin... 34.2 1.1
gi|223718133|ref|NM_001145306.1| Homo sapiens cyclin-dependent ... 34.2 1.1
gi|564730704|ref|NR_109779.1| Homo sapiens long intergenic non-... 32.2 4.3
> gi|1034581853|ref|XM_017020027.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X11,
mRNA
Length=1652
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1365 AAGGAACTGATGCATCTGAGC 1385
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1385 GCTCAGATGCATCAGTTCCTT 1365
> gi|1034581845|ref|XM_011538841.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X3,
mRNA
Length=1803
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1516 AAGGAACTGATGCATCTGAGC 1536
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1536 GCTCAGATGCATCAGTTCCTT 1516
> gi|1034581848|ref|XM_011538844.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X6,
mRNA
Length=1798
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1511 AAGGAACTGATGCATCTGAGC 1531
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1531 GCTCAGATGCATCAGTTCCTT 1511
> gi|767975572|ref|XM_011538845.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X8,
mRNA
Length=1678
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1391 AAGGAACTGATGCATCTGAGC 1411
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1411 GCTCAGATGCATCAGTTCCTT 1391
> gi|767975558|ref|XM_011538838.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X2,
mRNA
Length=2059
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1772 AAGGAACTGATGCATCTGAGC 1792
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1792 GCTCAGATGCATCAGTTCCTT 1772
> gi|1034581846|ref|XM_011538840.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X4,
mRNA
Length=1825
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1538 AAGGAACTGATGCATCTGAGC 1558
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1558 GCTCAGATGCATCAGTTCCTT 1538
> gi|1034581851|ref|XM_005253948.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X9,
mRNA
Length=1721
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1434 AAGGAACTGATGCATCTGAGC 1454
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1454 GCTCAGATGCATCAGTTCCTT 1434
> gi|1034581844|ref|XM_011538839.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X1,
mRNA
Length=1793
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1506 AAGGAACTGATGCATCTGAGC 1526
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1526 GCTCAGATGCATCAGTTCCTT 1506
> gi|1034581847|ref|XM_011538842.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X5,
mRNA
Length=1783
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1496 AAGGAACTGATGCATCTGAGC 1516
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1516 GCTCAGATGCATCAGTTCCTT 1496
> gi|767975576|ref|XM_011538847.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X12,
mRNA
Length=1653
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1366 AAGGAACTGATGCATCTGAGC 1386
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1386 GCTCAGATGCATCAGTTCCTT 1366
> gi|1034581849|ref|XM_017020026.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X7,
mRNA
Length=1767
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1480 AAGGAACTGATGCATCTGAGC 1500
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1500 GCTCAGATGCATCAGTTCCTT 1480
> gi|1034581852|ref|XM_011538846.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X10,
mRNA
Length=1752
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1465 AAGGAACTGATGCATCTGAGC 1485
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1485 GCTCAGATGCATCAGTTCCTT 1465
> gi|374088167|ref|NM_032369.3| Homo sapiens hydrogen voltage gated
channel 1 (HVCN1), transcript variant 2, mRNA
Length=1727
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1347 AAGGAACTGATGCATCTGAGC 1367
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1367 GCTCAGATGCATCAGTTCCTT 1347
> gi|91992152|ref|NM_001040107.1| Homo sapiens hydrogen voltage
gated channel 1 (HVCN1), transcript variant 1, mRNA
Length=1736
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1356 AAGGAACTGATGCATCTGAGC 1376
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1376 GCTCAGATGCATCAGTTCCTT 1356
> gi|374088169|ref|NM_001256413.1| Homo sapiens hydrogen voltage
gated channel 1 (HVCN1), transcript variant 3, mRNA
Length=1696
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1316 AAGGAACTGATGCATCTGAGC 1336
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1336 GCTCAGATGCATCAGTTCCTT 1316
> gi|1034581592|ref|XM_017019967.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X19, mRNA
Length=1958
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1878 GCTCAGATGCATCAGTTCCTT 1898
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1898 AAGGAACTGATGCATCTGAGC 1878
> gi|1034581590|ref|XM_017019966.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X18, mRNA
Length=2250
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 2170 GCTCAGATGCATCAGTTCCTT 2190
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 2190 AAGGAACTGATGCATCTGAGC 2170
> gi|1034581586|ref|XM_017019965.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X15, mRNA
Length=2203
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 2123 GCTCAGATGCATCAGTTCCTT 2143
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 2143 AAGGAACTGATGCATCTGAGC 2123
> gi|1034581589|ref|XM_006719599.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X17, mRNA
Length=1889
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1809 GCTCAGATGCATCAGTTCCTT 1829
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1829 AAGGAACTGATGCATCTGAGC 1809
> gi|1034581598|ref|XM_017019969.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X23, mRNA
Length=1847
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1767 GCTCAGATGCATCAGTTCCTT 1787
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1787 AAGGAACTGATGCATCTGAGC 1767
> gi|1034581583|ref|XM_005253935.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X12, mRNA
Length=1393
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1313 GCTCAGATGCATCAGTTCCTT 1333
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1333 AAGGAACTGATGCATCTGAGC 1313
> gi|1034581582|ref|XM_005253934.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X11, mRNA
Length=1408
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1328 GCTCAGATGCATCAGTTCCTT 1348
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1348 AAGGAACTGATGCATCTGAGC 1328
> gi|1034581600|ref|XR_243022.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X24, misc_RNA
Length=1556
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1476 GCTCAGATGCATCAGTTCCTT 1496
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1496 AAGGAACTGATGCATCTGAGC 1476
> gi|1034581579|ref|XM_011538738.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X8, mRNA
Length=1570
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1490 GCTCAGATGCATCAGTTCCTT 1510
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1510 AAGGAACTGATGCATCTGAGC 1490
> gi|1034581581|ref|XR_243021.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X10, misc_RNA
Length=1682
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1602 GCTCAGATGCATCAGTTCCTT 1622
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1622 AAGGAACTGATGCATCTGAGC 1602
> gi|1034581580|ref|XR_429116.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X9, misc_RNA
Length=1697
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1617 GCTCAGATGCATCAGTTCCTT 1637
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1637 AAGGAACTGATGCATCTGAGC 1617
> gi|1034581575|ref|XM_011538737.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X5, mRNA
Length=1696
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1616 GCTCAGATGCATCAGTTCCTT 1636
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1636 AAGGAACTGATGCATCTGAGC 1616
> gi|1034581576|ref|XR_944717.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X6, misc_RNA
Length=1923
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1843 GCTCAGATGCATCAGTTCCTT 1863
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1863 AAGGAACTGATGCATCTGAGC 1843
> gi|1034581572|ref|XM_011538733.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X1, mRNA
Length=1882
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1802 GCTCAGATGCATCAGTTCCTT 1822
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1822 AAGGAACTGATGCATCTGAGC 1802
> gi|1034581574|ref|XM_006719594.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X4, mRNA
Length=1985
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1905 GCTCAGATGCATCAGTTCCTT 1925
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1925 AAGGAACTGATGCATCTGAGC 1905
> gi|767975302|ref|XM_011538735.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X3, mRNA
Length=1781
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1697 GCTCAGATGCATCAGTTCCTT 1717
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1717 AAGGAACTGATGCATCTGAGC 1697
> gi|1034581577|ref|XM_017019964.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X7, mRNA
Length=1827
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1743 GCTCAGATGCATCAGTTCCTT 1763
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1763 AAGGAACTGATGCATCTGAGC 1743
> gi|1034581594|ref|XM_006719597.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X20, mRNA
Length=1811
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1731 GCTCAGATGCATCAGTTCCTT 1751
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1751 AAGGAACTGATGCATCTGAGC 1731
> gi|1034581584|ref|XM_006719595.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X13, mRNA
Length=2091
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 2011 GCTCAGATGCATCAGTTCCTT 2031
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 2031 AAGGAACTGATGCATCTGAGC 2011
> gi|1034581573|ref|XM_011538734.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X2, mRNA
Length=1879
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1799 GCTCAGATGCATCAGTTCCTT 1819
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1819 AAGGAACTGATGCATCTGAGC 1799
> gi|1034581588|ref|XM_006719598.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X16, mRNA
Length=2084
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 2004 GCTCAGATGCATCAGTTCCTT 2024
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 2024 AAGGAACTGATGCATCTGAGC 2004
> gi|1034581585|ref|XM_006719596.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X14, mRNA
Length=2114
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 2034 GCTCAGATGCATCAGTTCCTT 2054
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 2054 AAGGAACTGATGCATCTGAGC 2034
> gi|1034581597|ref|XM_006719600.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X22, mRNA
Length=1828
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1748 GCTCAGATGCATCAGTTCCTT 1768
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1768 AAGGAACTGATGCATCTGAGC 1748
> gi|1034581595|ref|XM_017019968.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X21, mRNA
Length=2047
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1967 GCTCAGATGCATCAGTTCCTT 1987
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1987 AAGGAACTGATGCATCTGAGC 1967
> gi|985567544|ref|NM_001319680.1| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 6, mRNA
Length=1862
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1778 GCTCAGATGCATCAGTTCCTT 1798
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1798 AAGGAACTGATGCATCTGAGC 1778
> gi|291190740|ref|NM_001082537.2| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 2, mRNA
Length=2025
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1925 GCTCAGATGCATCAGTTCCTT 1945
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1945 AAGGAACTGATGCATCTGAGC 1925
> gi|291190743|ref|NM_001082538.2| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 1, mRNA
Length=2040
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1940 GCTCAGATGCATCAGTTCCTT 1960
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1960 AAGGAACTGATGCATCTGAGC 1940
> gi|291190746|ref|NM_024549.5| Homo sapiens tectonic family member
1 (TCTN1), transcript variant 3, mRNA
Length=1983
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1883 GCTCAGATGCATCAGTTCCTT 1903
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1903 AAGGAACTGATGCATCTGAGC 1883
> gi|985567548|ref|NM_001319681.1| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 7, mRNA
Length=2198
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 2098 GCTCAGATGCATCAGTTCCTT 2118
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 2118 AAGGAACTGATGCATCTGAGC 2098
> gi|291190754|ref|NM_001173976.1| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 5, mRNA
Length=1969
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1869 GCTCAGATGCATCAGTTCCTT 1889
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 1889 AAGGAACTGATGCATCTGAGC 1869
> gi|985567543|ref|NM_001173975.2| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 4, mRNA
Length=2086
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 1986 GCTCAGATGCATCAGTTCCTT 2006
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 2006 AAGGAACTGATGCATCTGAGC 1986
> gi|985567561|ref|NR_135088.1| Homo sapiens tectonic family member
1 (TCTN1), transcript variant 9, non-coding RNA
Length=2154
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCCTT 21
|||||||||||||||||||||
Sbjct 2054 GCTCAGATGCATCAGTTCCTT 2074
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGGAACTGATGCATCTGAGC 48
|||||||||||||||||||||
Sbjct 2074 AAGGAACTGATGCATCTGAGC 2054
> gi|335353781|ref|NM_001242502.1| Homo sapiens deiodinase, iodothyronine,
type II (DIO2), transcript variant 4, mRNA
Length=6284
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 25 GAGAAGGAACTGATGCATCTGA 46
|||||||||||||| |||||||
Sbjct 1400 GAGAAGGAACTGATACATCTGA 1421
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 3 TCAGATGCATCAGTTCCTTCTC 24
||||||| ||||||||||||||
Sbjct 1421 TCAGATGTATCAGTTCCTTCTC 1400
> gi|335353779|ref|NM_001007023.3| Homo sapiens deiodinase, iodothyronine,
type II (DIO2), transcript variant 3, mRNA
Length=6150
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 25 GAGAAGGAACTGATGCATCTGA 46
|||||||||||||| |||||||
Sbjct 1266 GAGAAGGAACTGATACATCTGA 1287
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 3 TCAGATGCATCAGTTCCTTCTC 24
||||||| ||||||||||||||
Sbjct 1287 TCAGATGTATCAGTTCCTTCTC 1266
> gi|335353783|ref|NM_001242503.1| Homo sapiens deiodinase, iodothyronine,
type II (DIO2), transcript variant 5, mRNA
Length=6176
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 25 GAGAAGGAACTGATGCATCTGA 46
|||||||||||||| |||||||
Sbjct 1292 GAGAAGGAACTGATACATCTGA 1313
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 3 TCAGATGCATCAGTTCCTTCTC 24
||||||| ||||||||||||||
Sbjct 1313 TCAGATGTATCAGTTCCTTCTC 1292
> gi|335883180|ref|NM_013989.4| Homo sapiens deiodinase, iodothyronine,
type II (DIO2), transcript variant 1, mRNA
Length=6148
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 25 GAGAAGGAACTGATGCATCTGA 46
|||||||||||||| |||||||
Sbjct 1264 GAGAAGGAACTGATACATCTGA 1285
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 3 TCAGATGCATCAGTTCCTTCTC 24
||||||| ||||||||||||||
Sbjct 1285 TCAGATGTATCAGTTCCTTCTC 1264
> gi|335353780|ref|NM_000793.5| Homo sapiens deiodinase, iodothyronine,
type II (DIO2), transcript variant 2, mRNA
Length=6379
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 25 GAGAAGGAACTGATGCATCTGA 46
|||||||||||||| |||||||
Sbjct 1495 GAGAAGGAACTGATACATCTGA 1516
Score = 36.2 bits (18), Expect = 0.28
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 3 TCAGATGCATCAGTTCCTTCTC 24
||||||| ||||||||||||||
Sbjct 1516 TCAGATGTATCAGTTCCTTCTC 1495
> gi|214831265|ref|NM_178013.3| Homo sapiens proline rich membrane
anchor 1 (PRIMA1), mRNA
Length=3668
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 29 AGGAACTGATGCATCTG 45
|||||||||||||||||
Sbjct 1313 AGGAACTGATGCATCTG 1329
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 4 CAGATGCATCAGTTCCT 20
|||||||||||||||||
Sbjct 1329 CAGATGCATCAGTTCCT 1313
> gi|1034586209|ref|XM_011536456.2| PREDICTED: Homo sapiens proline
rich membrane anchor 1 (PRIMA1), transcript variant X1,
mRNA
Length=4104
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 29 AGGAACTGATGCATCTG 45
|||||||||||||||||
Sbjct 1767 AGGAACTGATGCATCTG 1783
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 4 CAGATGCATCAGTTCCT 20
|||||||||||||||||
Sbjct 1783 CAGATGCATCAGTTCCT 1767
> gi|1034653842|ref|XM_006715835.2| PREDICTED: Homo sapiens cyclin-dependent
kinase 6 (CDK6), transcript variant X1, mRNA
Length=11834
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 33 ACTGATGCATCTGAGCTTTTT 53
|||||| ||||||||||||||
Sbjct 3891 ACTGATTCATCTGAGCTTTTT 3911
> gi|223718130|ref|NM_001259.6| Homo sapiens cyclin-dependent kinase
6 (CDK6), transcript variant 1, mRNA
Length=11628
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 33 ACTGATGCATCTGAGCTTTTT 53
|||||| ||||||||||||||
Sbjct 3666 ACTGATTCATCTGAGCTTTTT 3686
> gi|223718133|ref|NM_001145306.1| Homo sapiens cyclin-dependent
kinase 6 (CDK6), transcript variant 2, mRNA
Length=11733
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 33 ACTGATGCATCTGAGCTTTTT 53
|||||| ||||||||||||||
Sbjct 3771 ACTGATTCATCTGAGCTTTTT 3791
> gi|564730704|ref|NR_109779.1| Homo sapiens long intergenic non-protein
coding RNA 1279 (LINC01279), long non-coding RNA
Length=5176
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 37 ATGCATCTGAGCTTTT 52
||||||||||||||||
Sbjct 1647 ATGCATCTGAGCTTTT 1662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21612390383
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2