BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCTCAGATGCATCAGTTCC (evalue = 10)
Length=19
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034581853|ref|XM_017020027.1| PREDICTED: Homo sapiens hydro... 38.2 0.006
gi|1034581845|ref|XM_011538841.2| PREDICTED: Homo sapiens hydro... 38.2 0.006
gi|1034581848|ref|XM_011538844.2| PREDICTED: Homo sapiens hydro... 38.2 0.006
gi|767975572|ref|XM_011538845.1| PREDICTED: Homo sapiens hydrog... 38.2 0.006
gi|767975558|ref|XM_011538838.1| PREDICTED: Homo sapiens hydrog... 38.2 0.006
gi|1034581846|ref|XM_011538840.2| PREDICTED: Homo sapiens hydro... 38.2 0.006
gi|1034581851|ref|XM_005253948.2| PREDICTED: Homo sapiens hydro... 38.2 0.006
gi|1034581844|ref|XM_011538839.2| PREDICTED: Homo sapiens hydro... 38.2 0.006
gi|1034581847|ref|XM_011538842.2| PREDICTED: Homo sapiens hydro... 38.2 0.006
gi|767975576|ref|XM_011538847.1| PREDICTED: Homo sapiens hydrog... 38.2 0.006
gi|1034581849|ref|XM_017020026.1| PREDICTED: Homo sapiens hydro... 38.2 0.006
gi|1034581852|ref|XM_011538846.2| PREDICTED: Homo sapiens hydro... 38.2 0.006
gi|374088167|ref|NM_032369.3| Homo sapiens hydrogen voltage gat... 38.2 0.006
gi|91992152|ref|NM_001040107.1| Homo sapiens hydrogen voltage g... 38.2 0.006
gi|374088169|ref|NM_001256413.1| Homo sapiens hydrogen voltage ... 38.2 0.006
gi|1034581592|ref|XM_017019967.1| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581590|ref|XM_017019966.1| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581586|ref|XM_017019965.1| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581589|ref|XM_006719599.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581598|ref|XM_017019969.1| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581583|ref|XM_005253935.3| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581582|ref|XM_005253934.3| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581600|ref|XR_243022.3| PREDICTED: Homo sapiens tectonic... 38.2 0.006
gi|1034581579|ref|XM_011538738.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581581|ref|XR_243021.3| PREDICTED: Homo sapiens tectonic... 38.2 0.006
gi|1034581580|ref|XR_429116.2| PREDICTED: Homo sapiens tectonic... 38.2 0.006
gi|1034581575|ref|XM_011538737.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581576|ref|XR_944717.2| PREDICTED: Homo sapiens tectonic... 38.2 0.006
gi|1034581572|ref|XM_011538733.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581574|ref|XM_006719594.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|767975302|ref|XM_011538735.1| PREDICTED: Homo sapiens tecton... 38.2 0.006
gi|1034581577|ref|XM_017019964.1| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581594|ref|XM_006719597.3| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581584|ref|XM_006719595.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581573|ref|XM_011538734.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581588|ref|XM_006719598.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581585|ref|XM_006719596.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581597|ref|XM_006719600.2| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|1034581595|ref|XM_017019968.1| PREDICTED: Homo sapiens tecto... 38.2 0.006
gi|985567544|ref|NM_001319680.1| Homo sapiens tectonic family m... 38.2 0.006
gi|291190740|ref|NM_001082537.2| Homo sapiens tectonic family m... 38.2 0.006
gi|291190743|ref|NM_001082538.2| Homo sapiens tectonic family m... 38.2 0.006
gi|291190746|ref|NM_024549.5| Homo sapiens tectonic family memb... 38.2 0.006
gi|985567548|ref|NM_001319681.1| Homo sapiens tectonic family m... 38.2 0.006
gi|291190754|ref|NM_001173976.1| Homo sapiens tectonic family m... 38.2 0.006
gi|985567543|ref|NM_001173975.2| Homo sapiens tectonic family m... 38.2 0.006
gi|985567561|ref|NR_135088.1| Homo sapiens tectonic family memb... 38.2 0.006
gi|214831265|ref|NM_178013.3| Homo sapiens proline rich membran... 32.2 0.35
gi|1034586209|ref|XM_011536456.2| PREDICTED: Homo sapiens proli... 32.2 0.35
gi|633257801|ref|NR_120414.1| Homo sapiens long intergenic non-... 30.2 1.4
gi|1034678860|ref|XR_001735043.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|1034565171|ref|XR_001738185.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|48476343|ref|NM_014747.2| Homo sapiens regulating synaptic m... 28.2 5.5
gi|1034563634|ref|XM_011542479.2| PREDICTED: Homo sapiens regul... 28.2 5.5
> gi|1034581853|ref|XM_017020027.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X11,
mRNA
Length=1652
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1385 GCTCAGATGCATCAGTTCC 1367
> gi|1034581845|ref|XM_011538841.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X3,
mRNA
Length=1803
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1536 GCTCAGATGCATCAGTTCC 1518
> gi|1034581848|ref|XM_011538844.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X6,
mRNA
Length=1798
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1531 GCTCAGATGCATCAGTTCC 1513
> gi|767975572|ref|XM_011538845.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X8,
mRNA
Length=1678
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1411 GCTCAGATGCATCAGTTCC 1393
> gi|767975558|ref|XM_011538838.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X2,
mRNA
Length=2059
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1792 GCTCAGATGCATCAGTTCC 1774
> gi|1034581846|ref|XM_011538840.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X4,
mRNA
Length=1825
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1558 GCTCAGATGCATCAGTTCC 1540
> gi|1034581851|ref|XM_005253948.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X9,
mRNA
Length=1721
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1454 GCTCAGATGCATCAGTTCC 1436
> gi|1034581844|ref|XM_011538839.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X1,
mRNA
Length=1793
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1526 GCTCAGATGCATCAGTTCC 1508
> gi|1034581847|ref|XM_011538842.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X5,
mRNA
Length=1783
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1516 GCTCAGATGCATCAGTTCC 1498
> gi|767975576|ref|XM_011538847.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X12,
mRNA
Length=1653
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1386 GCTCAGATGCATCAGTTCC 1368
> gi|1034581849|ref|XM_017020026.1| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X7,
mRNA
Length=1767
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1500 GCTCAGATGCATCAGTTCC 1482
> gi|1034581852|ref|XM_011538846.2| PREDICTED: Homo sapiens hydrogen
voltage gated channel 1 (HVCN1), transcript variant X10,
mRNA
Length=1752
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1485 GCTCAGATGCATCAGTTCC 1467
> gi|374088167|ref|NM_032369.3| Homo sapiens hydrogen voltage gated
channel 1 (HVCN1), transcript variant 2, mRNA
Length=1727
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1367 GCTCAGATGCATCAGTTCC 1349
> gi|91992152|ref|NM_001040107.1| Homo sapiens hydrogen voltage
gated channel 1 (HVCN1), transcript variant 1, mRNA
Length=1736
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1376 GCTCAGATGCATCAGTTCC 1358
> gi|374088169|ref|NM_001256413.1| Homo sapiens hydrogen voltage
gated channel 1 (HVCN1), transcript variant 3, mRNA
Length=1696
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1336 GCTCAGATGCATCAGTTCC 1318
> gi|1034581592|ref|XM_017019967.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X19, mRNA
Length=1958
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1878 GCTCAGATGCATCAGTTCC 1896
> gi|1034581590|ref|XM_017019966.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X18, mRNA
Length=2250
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 2170 GCTCAGATGCATCAGTTCC 2188
> gi|1034581586|ref|XM_017019965.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X15, mRNA
Length=2203
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 2123 GCTCAGATGCATCAGTTCC 2141
> gi|1034581589|ref|XM_006719599.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X17, mRNA
Length=1889
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1809 GCTCAGATGCATCAGTTCC 1827
> gi|1034581598|ref|XM_017019969.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X23, mRNA
Length=1847
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1767 GCTCAGATGCATCAGTTCC 1785
> gi|1034581583|ref|XM_005253935.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X12, mRNA
Length=1393
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1313 GCTCAGATGCATCAGTTCC 1331
> gi|1034581582|ref|XM_005253934.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X11, mRNA
Length=1408
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1328 GCTCAGATGCATCAGTTCC 1346
> gi|1034581600|ref|XR_243022.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X24, misc_RNA
Length=1556
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1476 GCTCAGATGCATCAGTTCC 1494
> gi|1034581579|ref|XM_011538738.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X8, mRNA
Length=1570
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1490 GCTCAGATGCATCAGTTCC 1508
> gi|1034581581|ref|XR_243021.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X10, misc_RNA
Length=1682
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1602 GCTCAGATGCATCAGTTCC 1620
> gi|1034581580|ref|XR_429116.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X9, misc_RNA
Length=1697
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1617 GCTCAGATGCATCAGTTCC 1635
> gi|1034581575|ref|XM_011538737.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X5, mRNA
Length=1696
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1616 GCTCAGATGCATCAGTTCC 1634
> gi|1034581576|ref|XR_944717.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X6, misc_RNA
Length=1923
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1843 GCTCAGATGCATCAGTTCC 1861
> gi|1034581572|ref|XM_011538733.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X1, mRNA
Length=1882
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1802 GCTCAGATGCATCAGTTCC 1820
> gi|1034581574|ref|XM_006719594.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X4, mRNA
Length=1985
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1905 GCTCAGATGCATCAGTTCC 1923
> gi|767975302|ref|XM_011538735.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X3, mRNA
Length=1781
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1697 GCTCAGATGCATCAGTTCC 1715
> gi|1034581577|ref|XM_017019964.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X7, mRNA
Length=1827
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1743 GCTCAGATGCATCAGTTCC 1761
> gi|1034581594|ref|XM_006719597.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X20, mRNA
Length=1811
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1731 GCTCAGATGCATCAGTTCC 1749
> gi|1034581584|ref|XM_006719595.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X13, mRNA
Length=2091
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 2011 GCTCAGATGCATCAGTTCC 2029
> gi|1034581573|ref|XM_011538734.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X2, mRNA
Length=1879
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1799 GCTCAGATGCATCAGTTCC 1817
> gi|1034581588|ref|XM_006719598.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X16, mRNA
Length=2084
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 2004 GCTCAGATGCATCAGTTCC 2022
> gi|1034581585|ref|XM_006719596.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X14, mRNA
Length=2114
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 2034 GCTCAGATGCATCAGTTCC 2052
> gi|1034581597|ref|XM_006719600.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X22, mRNA
Length=1828
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1748 GCTCAGATGCATCAGTTCC 1766
> gi|1034581595|ref|XM_017019968.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X21, mRNA
Length=2047
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1967 GCTCAGATGCATCAGTTCC 1985
> gi|985567544|ref|NM_001319680.1| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 6, mRNA
Length=1862
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1778 GCTCAGATGCATCAGTTCC 1796
> gi|291190740|ref|NM_001082537.2| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 2, mRNA
Length=2025
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1925 GCTCAGATGCATCAGTTCC 1943
> gi|291190743|ref|NM_001082538.2| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 1, mRNA
Length=2040
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1940 GCTCAGATGCATCAGTTCC 1958
> gi|291190746|ref|NM_024549.5| Homo sapiens tectonic family member
1 (TCTN1), transcript variant 3, mRNA
Length=1983
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1883 GCTCAGATGCATCAGTTCC 1901
> gi|985567548|ref|NM_001319681.1| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 7, mRNA
Length=2198
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 2098 GCTCAGATGCATCAGTTCC 2116
> gi|291190754|ref|NM_001173976.1| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 5, mRNA
Length=1969
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1869 GCTCAGATGCATCAGTTCC 1887
> gi|985567543|ref|NM_001173975.2| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 4, mRNA
Length=2086
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 1986 GCTCAGATGCATCAGTTCC 2004
> gi|985567561|ref|NR_135088.1| Homo sapiens tectonic family member
1 (TCTN1), transcript variant 9, non-coding RNA
Length=2154
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTCC 19
|||||||||||||||||||
Sbjct 2054 GCTCAGATGCATCAGTTCC 2072
> gi|214831265|ref|NM_178013.3| Homo sapiens proline rich membrane
anchor 1 (PRIMA1), mRNA
Length=3668
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 4 CAGATGCATCAGTTCC 19
||||||||||||||||
Sbjct 1329 CAGATGCATCAGTTCC 1314
> gi|1034586209|ref|XM_011536456.2| PREDICTED: Homo sapiens proline
rich membrane anchor 1 (PRIMA1), transcript variant X1,
mRNA
Length=4104
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 4 CAGATGCATCAGTTCC 19
||||||||||||||||
Sbjct 1783 CAGATGCATCAGTTCC 1768
> gi|633257801|ref|NR_120414.1| Homo sapiens long intergenic non-protein
coding RNA 1049 (LINC01049), long non-coding RNA
Length=1003
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 5 AGATGCATCAGTTCC 19
|||||||||||||||
Sbjct 776 AGATGCATCAGTTCC 790
> gi|1034678860|ref|XR_001735043.1| PREDICTED: Homo sapiens uncharacterized
LOC107985174 (LOC107985174), transcript variant
X4, ncRNA
Length=6056
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCA 14
||||||||||||||
Sbjct 3816 GCTCAGATGCATCA 3829
> gi|1034565171|ref|XR_001738185.1| PREDICTED: Homo sapiens uncharacterized
LOC107985174 (LOC107985174), transcript variant
X4, ncRNA
Length=6046
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCA 14
||||||||||||||
Sbjct 3815 GCTCAGATGCATCA 3828
> gi|48476343|ref|NM_014747.2| Homo sapiens regulating synaptic
membrane exocytosis 3 (RIMS3), mRNA
Length=7233
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTC 18
|||||||| |||||||||
Sbjct 420 GCTCAGATTCATCAGTTC 437
> gi|1034563634|ref|XM_011542479.2| PREDICTED: Homo sapiens regulating
synaptic membrane exocytosis 3 (RIMS3), transcript variant
X1, mRNA
Length=6871
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GCTCAGATGCATCAGTTC 18
|||||||| |||||||||
Sbjct 306 GCTCAGATTCATCAGTTC 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1752885255
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2