BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCGTCATTGACATCTGCATGACTCGAGTCATGCAGATGTCAATGACGCTTTTTT (evalue = 10)
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034629736|ref|XR_937944.2| PREDICTED: Homo sapiens eukaryot... 42.1 0.005
gi|83367070|ref|NM_003753.3| Homo sapiens eukaryotic translatio... 42.1 0.005
> gi|1034629736|ref|XR_937944.2| PREDICTED: Homo sapiens eukaryotic
translation initiation factor 3 subunit D (EIF3D), transcript
variant X1, misc_RNA
Length=2057
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGTCATTGACATCTGCATGA 21
|||||||||||||||||||||
Sbjct 1906 GCGTCATTGACATCTGCATGA 1926
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TCATGCAGATGTCAATGACGC 48
|||||||||||||||||||||
Sbjct 1926 TCATGCAGATGTCAATGACGC 1906
> gi|83367070|ref|NM_003753.3| Homo sapiens eukaryotic translation
initiation factor 3 subunit D (EIF3D), mRNA
Length=1949
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGTCATTGACATCTGCATGA 21
|||||||||||||||||||||
Sbjct 1643 GCGTCATTGACATCTGCATGA 1663
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TCATGCAGATGTCAATGACGC 48
|||||||||||||||||||||
Sbjct 1663 TCATGCAGATGTCAATGACGC 1643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21612390383
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2