BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCGGAGGGTTTGAAAGAATATCTCGAGATATTCTTTCAAACCCTCCGTTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52... 42.1 0.004
gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52... 42.1 0.004
gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52... 42.1 0.004
gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 li... 42.1 0.004
gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 li... 42.1 0.004
gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 li... 42.1 0.004
gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 li... 42.1 0.004
gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52... 42.1 0.004
gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 li... 42.1 0.004
gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 li... 42.1 0.004
gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 li... 42.1 0.004
> gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 8, mRNA
Length=2230
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 894 GCGGAGGGTTTGAAAGAATAT 914
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 914 ATATTCTTTCAAACCCTCCG 895
> gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 7, mRNA
Length=2284
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 948 GCGGAGGGTTTGAAAGAATAT 968
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 968 ATATTCTTTCAAACCCTCCG 949
> gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 9, mRNA
Length=2197
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 861 GCGGAGGGTTTGAAAGAATAT 881
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 881 ATATTCTTTCAAACCCTCCG 862
> gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 6, mRNA
Length=2299
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 963 GCGGAGGGTTTGAAAGAATAT 983
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 983 ATATTCTTTCAAACCCTCCG 964
> gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 4, mRNA
Length=2341
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1005 GCGGAGGGTTTGAAAGAATAT 1025
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 1025 ATATTCTTTCAAACCCTCCG 1006
> gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 2, mRNA
Length=2368
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1032 GCGGAGGGTTTGAAAGAATAT 1052
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 1052 ATATTCTTTCAAACCCTCCG 1033
> gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 11, non-coding RNA
Length=2328
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 992 GCGGAGGGTTTGAAAGAATAT 1012
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 1012 ATATTCTTTCAAACCCTCCG 993
> gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 10, mRNA
Length=2310
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 974 GCGGAGGGTTTGAAAGAATAT 994
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 994 ATATTCTTTCAAACCCTCCG 975
> gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 5, mRNA
Length=2359
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1023 GCGGAGGGTTTGAAAGAATAT 1043
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 1043 ATATTCTTTCAAACCCTCCG 1024
> gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 3, mRNA
Length=2401
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1065 GCGGAGGGTTTGAAAGAATAT 1085
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 1085 ATATTCTTTCAAACCCTCCG 1066
> gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 1, mRNA
Length=2428
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1092 GCGGAGGGTTTGAAAGAATAT 1112
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 ATATTCTTTCAAACCCTCCG 47
||||||||||||||||||||
Sbjct 1112 ATATTCTTTCAAACCCTCCG 1093
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2