BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCGGAGGGTTTGAAAGAATATCTCGAGATATTC (evalue = 10)
Length=33
Score E
Sequences producing significant alignments: (Bits) Value
gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52... 42.1 0.002
gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52... 42.1 0.002
gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52... 42.1 0.002
gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 li... 42.1 0.002
gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 li... 42.1 0.002
gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 li... 42.1 0.002
gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 li... 42.1 0.002
gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52... 42.1 0.002
gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 li... 42.1 0.002
gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 li... 42.1 0.002
gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 li... 42.1 0.002
gi|254750702|ref|NM_020648.5| Homo sapiens twisted gastrulation... 30.2 7.4
gi|1034593618|ref|XM_011522867.2| PREDICTED: Homo sapiens chrom... 30.2 7.4
gi|1021312101|ref|NM_152342.3| Homo sapiens chromodomain protei... 30.2 7.4
gi|767989391|ref|XM_011522866.1| PREDICTED: Homo sapiens chromo... 30.2 7.4
> gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 8, mRNA
Length=2230
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 894 GCGGAGGGTTTGAAAGAATAT 914
> gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 7, mRNA
Length=2284
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 948 GCGGAGGGTTTGAAAGAATAT 968
> gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 9, mRNA
Length=2197
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 861 GCGGAGGGTTTGAAAGAATAT 881
> gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 6, mRNA
Length=2299
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 963 GCGGAGGGTTTGAAAGAATAT 983
> gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 4, mRNA
Length=2341
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1005 GCGGAGGGTTTGAAAGAATAT 1025
> gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 2, mRNA
Length=2368
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1032 GCGGAGGGTTTGAAAGAATAT 1052
> gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 11, non-coding RNA
Length=2328
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 992 GCGGAGGGTTTGAAAGAATAT 1012
> gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 10, mRNA
Length=2310
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 974 GCGGAGGGTTTGAAAGAATAT 994
> gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 5, mRNA
Length=2359
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1023 GCGGAGGGTTTGAAAGAATAT 1043
> gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 3, mRNA
Length=2401
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1065 GCGGAGGGTTTGAAAGAATAT 1085
> gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 1, mRNA
Length=2428
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAAGAATAT 21
|||||||||||||||||||||
Sbjct 1092 GCGGAGGGTTTGAAAGAATAT 1112
> gi|254750702|ref|NM_020648.5| Homo sapiens twisted gastrulation
BMP signaling modulator 1 (TWSG1), mRNA
Length=3779
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 GAGGGTTTGAAAGAA 18
|||||||||||||||
Sbjct 2981 GAGGGTTTGAAAGAA 2995
> gi|1034593618|ref|XM_011522867.2| PREDICTED: Homo sapiens chromodomain
protein, Y-like 2 (CDYL2), transcript variant X2,
mRNA
Length=8670
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GGGTTTGAAAGAATA 20
|||||||||||||||
Sbjct 5181 GGGTTTGAAAGAATA 5195
> gi|1021312101|ref|NM_152342.3| Homo sapiens chromodomain protein,
Y-like 2 (CDYL2), mRNA
Length=8131
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GGGTTTGAAAGAATA 20
|||||||||||||||
Sbjct 4626 GGGTTTGAAAGAATA 4640
> gi|767989391|ref|XM_011522866.1| PREDICTED: Homo sapiens chromodomain
protein, Y-like 2 (CDYL2), transcript variant X1, mRNA
Length=8127
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GGGTTTGAAAGAATA 20
|||||||||||||||
Sbjct 4638 GGGTTTGAAAGAATA 4652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 9345898544
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2