BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= GCGGAGGGTTTGAAAGAATATCTCGAGATATTC (evalue = 10)

Length=33
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52...  42.1    0.002
  gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52...  42.1    0.002
  gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52...  42.1    0.002
  gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 li...  42.1    0.002
  gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 li...  42.1    0.002
  gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 li...  42.1    0.002
  gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 li...  42.1    0.002
  gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52...  42.1    0.002
  gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 li...  42.1    0.002
  gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 li...  42.1    0.002
  gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 li...  42.1    0.002
  gi|254750702|ref|NM_020648.5| Homo sapiens twisted gastrulation...  30.2    7.4  
  gi|1034593618|ref|XM_011522867.2| PREDICTED: Homo sapiens chrom...  30.2    7.4  
  gi|1021312101|ref|NM_152342.3| Homo sapiens chromodomain protei...  30.2    7.4  
  gi|767989391|ref|XM_011522866.1| PREDICTED: Homo sapiens chromo...  30.2    7.4  


> gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 8, mRNA
Length=2230

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1    GCGGAGGGTTTGAAAGAATAT  21
            |||||||||||||||||||||
Sbjct  894  GCGGAGGGTTTGAAAGAATAT  914


> gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 7, mRNA
Length=2284

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1    GCGGAGGGTTTGAAAGAATAT  21
            |||||||||||||||||||||
Sbjct  948  GCGGAGGGTTTGAAAGAATAT  968


> gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 9, mRNA
Length=2197

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1    GCGGAGGGTTTGAAAGAATAT  21
            |||||||||||||||||||||
Sbjct  861  GCGGAGGGTTTGAAAGAATAT  881


> gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 6, mRNA
Length=2299

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1    GCGGAGGGTTTGAAAGAATAT  21
            |||||||||||||||||||||
Sbjct  963  GCGGAGGGTTTGAAAGAATAT  983


> gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 4, mRNA
Length=2341

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1     GCGGAGGGTTTGAAAGAATAT  21
             |||||||||||||||||||||
Sbjct  1005  GCGGAGGGTTTGAAAGAATAT  1025


> gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 2, mRNA
Length=2368

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1     GCGGAGGGTTTGAAAGAATAT  21
             |||||||||||||||||||||
Sbjct  1032  GCGGAGGGTTTGAAAGAATAT  1052


> gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 11, non-coding RNA
Length=2328

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1     GCGGAGGGTTTGAAAGAATAT  21
             |||||||||||||||||||||
Sbjct  992   GCGGAGGGTTTGAAAGAATAT  1012


> gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 10, mRNA
Length=2310

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1    GCGGAGGGTTTGAAAGAATAT  21
            |||||||||||||||||||||
Sbjct  974  GCGGAGGGTTTGAAAGAATAT  994


> gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 5, mRNA
Length=2359

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1     GCGGAGGGTTTGAAAGAATAT  21
             |||||||||||||||||||||
Sbjct  1023  GCGGAGGGTTTGAAAGAATAT  1043


> gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 3, mRNA
Length=2401

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1     GCGGAGGGTTTGAAAGAATAT  21
             |||||||||||||||||||||
Sbjct  1065  GCGGAGGGTTTGAAAGAATAT  1085


> gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 1, mRNA
Length=2428

 Score = 42.1 bits (21),  Expect = 0.002
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1     GCGGAGGGTTTGAAAGAATAT  21
             |||||||||||||||||||||
Sbjct  1092  GCGGAGGGTTTGAAAGAATAT  1112


> gi|254750702|ref|NM_020648.5| Homo sapiens twisted gastrulation 
BMP signaling modulator 1 (TWSG1), mRNA
Length=3779

 Score = 30.2 bits (15),  Expect = 7.4
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  4     GAGGGTTTGAAAGAA  18
             |||||||||||||||
Sbjct  2981  GAGGGTTTGAAAGAA  2995


> gi|1034593618|ref|XM_011522867.2| PREDICTED: Homo sapiens chromodomain 
protein, Y-like 2 (CDYL2), transcript variant X2, 
mRNA
Length=8670

 Score = 30.2 bits (15),  Expect = 7.4
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  6     GGGTTTGAAAGAATA  20
             |||||||||||||||
Sbjct  5181  GGGTTTGAAAGAATA  5195


> gi|1021312101|ref|NM_152342.3| Homo sapiens chromodomain protein, 
Y-like 2 (CDYL2), mRNA
Length=8131

 Score = 30.2 bits (15),  Expect = 7.4
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  6     GGGTTTGAAAGAATA  20
             |||||||||||||||
Sbjct  4626  GGGTTTGAAAGAATA  4640


> gi|767989391|ref|XM_011522866.1| PREDICTED: Homo sapiens chromodomain 
protein, Y-like 2 (CDYL2), transcript variant X1, mRNA
Length=8127

 Score = 30.2 bits (15),  Expect = 7.4
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  6     GGGTTTGAAAGAATA  20
             |||||||||||||||
Sbjct  4638  GGGTTTGAAAGAATA  4652



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 9345898544


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2