BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCGGAGGGTTTGAAA (evalue = 10)
Length=15
Score E
Sequences producing significant alignments: (Bits) Value
gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52... 30.2 0.93
gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52... 30.2 0.93
gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52... 30.2 0.93
gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 li... 30.2 0.93
gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 li... 30.2 0.93
gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 li... 30.2 0.93
gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 li... 30.2 0.93
gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52... 30.2 0.93
gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 li... 30.2 0.93
gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 li... 30.2 0.93
gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 li... 30.2 0.93
gi|1034581140|ref|XR_944677.2| PREDICTED: Homo sapiens SDS3 hom... 28.2 3.7
> gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 8, mRNA
Length=2230
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 894 GCGGAGGGTTTGAAA 908
> gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 7, mRNA
Length=2284
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 948 GCGGAGGGTTTGAAA 962
> gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 9, mRNA
Length=2197
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 861 GCGGAGGGTTTGAAA 875
> gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 6, mRNA
Length=2299
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 963 GCGGAGGGTTTGAAA 977
> gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 4, mRNA
Length=2341
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 1005 GCGGAGGGTTTGAAA 1019
> gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 2, mRNA
Length=2368
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 1032 GCGGAGGGTTTGAAA 1046
> gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 11, non-coding RNA
Length=2328
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 992 GCGGAGGGTTTGAAA 1006
> gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 10, mRNA
Length=2310
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 974 GCGGAGGGTTTGAAA 988
> gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 5, mRNA
Length=2359
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 1023 GCGGAGGGTTTGAAA 1037
> gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 3, mRNA
Length=2401
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 1065 GCGGAGGGTTTGAAA 1079
> gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 1, mRNA
Length=2428
Score = 30.2 bits (15), Expect = 0.93
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GCGGAGGGTTTGAAA 15
|||||||||||||||
Sbjct 1092 GCGGAGGGTTTGAAA 1106
> gi|1034581140|ref|XR_944677.2| PREDICTED: Homo sapiens SDS3 homolog,
SIN3A corepressor complex component (SUDS3), transcript
variant X2, misc_RNA
Length=8063
Score = 28.2 bits (14), Expect = 3.7
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCGGAGGGTTTGAA 14
||||||||||||||
Sbjct 3024 GCGGAGGGTTTGAA 3011
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1169648726
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2