BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCCTCTTCCGTGCTGGTTTG (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|222537766|ref|NR_026730.1| Homo sapiens transmembrane phosph... 40.1 0.002
gi|338968909|ref|NR_040107.1| Homo sapiens ADPGK antisense RNA ... 30.2 1.9
gi|1034693183|ref|XR_001755160.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034582594|ref|XR_001748958.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|289547646|ref|NM_001172657.1| Homo sapiens zinc finger FYVE-... 28.2 7.3
gi|350994436|ref|NM_022659.3| Homo sapiens early B-cell factor ... 28.2 7.3
> gi|222537766|ref|NR_026730.1| Homo sapiens transmembrane phosphoinositide
3-phosphatase and tensin homolog 2 pseudogene 1
(TPTE2P1), non-coding RNA
Length=6477
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 GCCTCTTCCGTGCTGGTTTG 20
||||||||||||||||||||
Sbjct 660 GCCTCTTCCGTGCTGGTTTG 679
> gi|338968909|ref|NR_040107.1| Homo sapiens ADPGK antisense RNA
1 (ADPGK-AS1), long non-coding RNA
Length=2730
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 GCCTCTTCCGTGCTG 15
|||||||||||||||
Sbjct 2383 GCCTCTTCCGTGCTG 2369
> gi|1034693183|ref|XR_001755160.1| PREDICTED: Homo sapiens uncharacterized
LOC107987312 (LOC107987312), ncRNA
Length=3367
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TCTTCCGTGCTGGT 17
||||||||||||||
Sbjct 1394 TCTTCCGTGCTGGT 1407
> gi|1034582594|ref|XR_001748958.1| PREDICTED: Homo sapiens uncharacterized
LOC100128253 (LOC100128253), transcript variant
X5, misc_RNA
Length=8943
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 TTCCGTGCTGGTTT 19
||||||||||||||
Sbjct 8521 TTCCGTGCTGGTTT 8534
> gi|289547646|ref|NM_001172657.1| Homo sapiens zinc finger FYVE-type
containing 28 (ZFYVE28), transcript variant 4, mRNA
Length=1833
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CCTCTTCCGTGCTG 15
||||||||||||||
Sbjct 1645 CCTCTTCCGTGCTG 1658
> gi|350994436|ref|NM_022659.3| Homo sapiens early B-cell factor
2 (EBF2), mRNA
Length=4872
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TCTTCCGTGCTGGT 17
||||||||||||||
Sbjct 2463 TCTTCCGTGCTGGT 2450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2