BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCCCTCGGTGTCCTACTTC (evalue = 10)
Length=19
Score E
Sequences producing significant alignments: (Bits) Value
gi|77628152|ref|NM_053056.2| Homo sapiens cyclin D1 (CCND1), mRNA 38.2 0.006
gi|336455152|ref|NR_038237.1| Homo sapiens RAB11B antisense RNA... 28.2 5.5
gi|563319182|ref|NR_106729.1| Homo sapiens microRNA 6081 (MIR60... 28.2 5.5
gi|767917706|ref|XM_011511012.1| PREDICTED: Homo sapiens unc-80... 28.2 5.5
gi|1034613344|ref|XM_017003893.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|1034613341|ref|XM_011511010.2| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|1034613340|ref|XR_001738725.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|1034613336|ref|XM_017003890.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|1034613324|ref|XM_017003884.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|1034613334|ref|XM_017003889.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|1034613332|ref|XM_017003888.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|530370189|ref|XM_005246476.1| PREDICTED: Homo sapiens unc-80... 28.2 5.5
gi|1034613326|ref|XM_017003885.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|767917694|ref|XM_011511006.1| PREDICTED: Homo sapiens unc-80... 28.2 5.5
gi|767917696|ref|XM_011511007.1| PREDICTED: Homo sapiens unc-80... 28.2 5.5
gi|1034613330|ref|XM_017003887.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|767917692|ref|XM_011511005.1| PREDICTED: Homo sapiens unc-80... 28.2 5.5
gi|1034613328|ref|XM_017003886.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|767917698|ref|XM_011511008.1| PREDICTED: Homo sapiens unc-80... 28.2 5.5
gi|767917690|ref|XM_011511004.1| PREDICTED: Homo sapiens unc-80... 28.2 5.5
gi|256818777|ref|NM_182587.3| Homo sapiens unc-80 homolog, NALC... 28.2 5.5
gi|197209825|ref|NM_032504.1| Homo sapiens unc-80 homolog, NALC... 28.2 5.5
gi|1034613338|ref|XM_017003891.1| PREDICTED: Homo sapiens unc-8... 28.2 5.5
gi|1034559146|ref|XM_011509616.2| PREDICTED: Homo sapiens PDZ d... 28.2 5.5
gi|1034559150|ref|XM_017001465.1| PREDICTED: Homo sapiens PDZ d... 28.2 5.5
gi|1034559152|ref|XM_017001466.1| PREDICTED: Homo sapiens PDZ d... 28.2 5.5
gi|1034559144|ref|XM_017001464.1| PREDICTED: Homo sapiens PDZ d... 28.2 5.5
gi|1034559147|ref|XM_011509618.2| PREDICTED: Homo sapiens PDZ d... 28.2 5.5
gi|1034559154|ref|XM_017001467.1| PREDICTED: Homo sapiens PDZ d... 28.2 5.5
gi|1034559148|ref|XM_011509619.2| PREDICTED: Homo sapiens PDZ d... 28.2 5.5
gi|318037201|ref|NM_002614.4| Homo sapiens PDZ domain containin... 28.2 5.5
gi|318037202|ref|NM_001201325.1| Homo sapiens PDZ domain contai... 28.2 5.5
gi|318037206|ref|NM_001201326.1| Homo sapiens PDZ domain contai... 28.2 5.5
> gi|77628152|ref|NM_053056.2| Homo sapiens cyclin D1 (CCND1),
mRNA
Length=4304
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCCCTCGGTGTCCTACTTC 19
|||||||||||||||||||
Sbjct 326 GCCCTCGGTGTCCTACTTC 344
> gi|336455152|ref|NR_038237.1| Homo sapiens RAB11B antisense RNA
1 (RAB11B-AS1), long non-coding RNA
Length=1034
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 473 GCCCTCGGTGTCCT 486
> gi|563319182|ref|NR_106729.1| Homo sapiens microRNA 6081 (MIR6081),
microRNA
Length=97
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 CCTCGGTGTCCTAC 16
||||||||||||||
Sbjct 47 CCTCGGTGTCCTAC 34
> gi|767917706|ref|XM_011511012.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X20,
mRNA
Length=6015
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613344|ref|XM_017003893.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X18,
mRNA
Length=7023
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613341|ref|XM_011511010.2| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X16,
mRNA
Length=9237
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613340|ref|XR_001738725.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X15,
misc_RNA
Length=9055
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613336|ref|XM_017003890.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X13,
mRNA
Length=13540
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613324|ref|XM_017003884.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X4,
mRNA
Length=13786
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613334|ref|XM_017003889.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X12,
mRNA
Length=13552
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613332|ref|XM_017003888.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X11,
mRNA
Length=13555
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|530370189|ref|XM_005246476.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X7,
mRNA
Length=13756
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613326|ref|XM_017003885.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X6,
mRNA
Length=13759
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|767917694|ref|XM_011511006.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X3,
mRNA
Length=13795
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|767917696|ref|XM_011511007.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X5,
mRNA
Length=13765
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613330|ref|XM_017003887.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X10,
mRNA
Length=13597
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|767917692|ref|XM_011511005.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X2,
mRNA
Length=13798
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613328|ref|XM_017003886.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X9,
mRNA
Length=13675
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|767917698|ref|XM_011511008.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X8,
mRNA
Length=13744
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|767917690|ref|XM_011511004.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X1,
mRNA
Length=13801
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|256818777|ref|NM_182587.3| Homo sapiens unc-80 homolog, NALCN
activator (UNC80), transcript variant 2, mRNA
Length=13490
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|197209825|ref|NM_032504.1| Homo sapiens unc-80 homolog, NALCN
activator (UNC80), transcript variant 1, mRNA
Length=13562
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2517 GCCCTCGGTGTCCT 2504
> gi|1034613338|ref|XM_017003891.1| PREDICTED: Homo sapiens unc-80
homolog, NALCN activator (UNC80), transcript variant X14,
mRNA
Length=13820
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 2536 GCCCTCGGTGTCCT 2523
> gi|1034559146|ref|XM_011509616.2| PREDICTED: Homo sapiens PDZ
domain containing 1 (PDZK1), transcript variant X2, mRNA
Length=1649
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 98 GCCCTCGGTGTCCT 85
> gi|1034559150|ref|XM_017001465.1| PREDICTED: Homo sapiens PDZ
domain containing 1 (PDZK1), transcript variant X5, mRNA
Length=2034
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 98 GCCCTCGGTGTCCT 85
> gi|1034559152|ref|XM_017001466.1| PREDICTED: Homo sapiens PDZ
domain containing 1 (PDZK1), transcript variant X6, mRNA
Length=1809
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 98 GCCCTCGGTGTCCT 85
> gi|1034559144|ref|XM_017001464.1| PREDICTED: Homo sapiens PDZ
domain containing 1 (PDZK1), transcript variant X1, mRNA
Length=1921
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 98 GCCCTCGGTGTCCT 85
> gi|1034559147|ref|XM_011509618.2| PREDICTED: Homo sapiens PDZ
domain containing 1 (PDZK1), transcript variant X3, mRNA
Length=1784
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 186 GCCCTCGGTGTCCT 173
> gi|1034559154|ref|XM_017001467.1| PREDICTED: Homo sapiens PDZ
domain containing 1 (PDZK1), transcript variant X7, mRNA
Length=2073
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 289 GCCCTCGGTGTCCT 276
> gi|1034559148|ref|XM_011509619.2| PREDICTED: Homo sapiens PDZ
domain containing 1 (PDZK1), transcript variant X4, mRNA
Length=2228
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 98 GCCCTCGGTGTCCT 85
> gi|318037201|ref|NM_002614.4| Homo sapiens PDZ domain containing
1 (PDZK1), transcript variant 1, mRNA
Length=2301
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 253 GCCCTCGGTGTCCT 240
> gi|318037202|ref|NM_001201325.1| Homo sapiens PDZ domain containing
1 (PDZK1), transcript variant 2, mRNA
Length=2230
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 182 GCCCTCGGTGTCCT 169
> gi|318037206|ref|NM_001201326.1| Homo sapiens PDZ domain containing
1 (PDZK1), transcript variant 3, mRNA
Length=1897
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GCCCTCGGTGTCCT 14
||||||||||||||
Sbjct 182 GCCCTCGGTGTCCT 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1752885255
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2