BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCCATTGAACTTAGCCAGGA (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034611107|ref|XM_017003182.1| PREDICTED: Homo sapiens ubiqu... 40.1 0.002
gi|767913679|ref|XM_011532487.1| PREDICTED: Homo sapiens ubiqui... 40.1 0.002
gi|767913678|ref|XM_006711923.2| PREDICTED: Homo sapiens ubiqui... 40.1 0.002
gi|767913677|ref|XR_939653.1| PREDICTED: Homo sapiens ubiquitin... 40.1 0.002
gi|767913676|ref|XR_939652.1| PREDICTED: Homo sapiens ubiquitin... 40.1 0.002
gi|376319200|ref|NM_001256726.1| Homo sapiens ubiquitin specifi... 40.1 0.002
gi|376319198|ref|NM_001256725.1| Homo sapiens ubiquitin specifi... 40.1 0.002
gi|376000080|ref|NM_006590.3| Homo sapiens ubiquitin specific p... 40.1 0.002
gi|767913681|ref|XM_011532488.1| PREDICTED: Homo sapiens ubiqui... 40.1 0.002
gi|1034611106|ref|XR_001738593.1| PREDICTED: Homo sapiens ubiqu... 40.1 0.002
gi|376319205|ref|NM_001256728.1| Homo sapiens ubiquitin specifi... 40.1 0.002
gi|376319202|ref|NM_001256727.1| Homo sapiens ubiquitin specifi... 40.1 0.002
gi|578802667|ref|XM_006711922.1| PREDICTED: Homo sapiens ubiqui... 40.1 0.002
gi|376319204|ref|NR_046347.1| Homo sapiens ubiquitin specific p... 40.1 0.002
gi|1034670541|ref|XM_011518823.2| PREDICTED: Homo sapiens synta... 28.2 7.3
gi|1034670537|ref|XM_011518820.2| PREDICTED: Homo sapiens synta... 28.2 7.3
gi|1034670539|ref|XM_017014875.1| PREDICTED: Homo sapiens synta... 28.2 7.3
gi|1034670538|ref|XM_011518821.2| PREDICTED: Homo sapiens synta... 28.2 7.3
gi|157388936|ref|NM_017919.2| Homo sapiens syntaxin 17 (STX17),... 28.2 7.3
gi|1034688803|ref|XR_001743409.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034688801|ref|XR_001743405.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034688800|ref|XR_001743404.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034671621|ref|XM_017015222.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034671624|ref|XR_001746390.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034671620|ref|XM_005251619.3| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034671623|ref|XR_242515.2| PREDICTED: Homo sapiens phosphat... 28.2 7.3
gi|1034671629|ref|XR_001746391.1| PREDICTED: Homo sapiens phosp... 28.2 7.3
gi|1034619408|ref|XR_001739689.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034619406|ref|XR_001739687.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034619405|ref|XR_001739686.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
> gi|1034611107|ref|XM_017003182.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X6,
mRNA
Length=2234
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1333 GCCATTGAACTTAGCCAGGA 1314
> gi|767913679|ref|XM_011532487.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X7,
mRNA
Length=2230
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1329 GCCATTGAACTTAGCCAGGA 1310
> gi|767913678|ref|XM_006711923.2| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X4,
mRNA
Length=2224
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1323 GCCATTGAACTTAGCCAGGA 1304
> gi|767913677|ref|XR_939653.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X2, misc_RNA
Length=2164
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1340 GCCATTGAACTTAGCCAGGA 1321
> gi|767913676|ref|XR_939652.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X1, misc_RNA
Length=2327
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1340 GCCATTGAACTTAGCCAGGA 1321
> gi|376319200|ref|NM_001256726.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 3, mRNA
Length=2162
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1376 GCCATTGAACTTAGCCAGGA 1357
> gi|376319198|ref|NM_001256725.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 2, mRNA
Length=2135
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1376 GCCATTGAACTTAGCCAGGA 1357
> gi|376000080|ref|NM_006590.3| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 1, mRNA
Length=2298
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1376 GCCATTGAACTTAGCCAGGA 1357
> gi|767913681|ref|XM_011532488.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X8,
mRNA
Length=2163
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1262 GCCATTGAACTTAGCCAGGA 1243
> gi|1034611106|ref|XR_001738593.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X3,
misc_RNA
Length=2243
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1256 GCCATTGAACTTAGCCAGGA 1237
> gi|376319205|ref|NM_001256728.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 5, mRNA
Length=2108
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1186 GCCATTGAACTTAGCCAGGA 1167
> gi|376319202|ref|NM_001256727.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 4, mRNA
Length=2183
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1261 GCCATTGAACTTAGCCAGGA 1242
> gi|578802667|ref|XM_006711922.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X5,
mRNA
Length=2145
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1244 GCCATTGAACTTAGCCAGGA 1225
> gi|376319204|ref|NR_046347.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 6, non-coding RNA
Length=2186
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GCCATTGAACTTAGCCAGGA 20
||||||||||||||||||||
Sbjct 1264 GCCATTGAACTTAGCCAGGA 1245
> gi|1034670541|ref|XM_011518823.2| PREDICTED: Homo sapiens syntaxin
17 (STX17), transcript variant X4, mRNA
Length=6730
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 ATTGAACTTAGCCA 17
||||||||||||||
Sbjct 495 ATTGAACTTAGCCA 508
> gi|1034670537|ref|XM_011518820.2| PREDICTED: Homo sapiens syntaxin
17 (STX17), transcript variant X1, mRNA
Length=6992
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 ATTGAACTTAGCCA 17
||||||||||||||
Sbjct 757 ATTGAACTTAGCCA 770
> gi|1034670539|ref|XM_017014875.1| PREDICTED: Homo sapiens syntaxin
17 (STX17), transcript variant X3, mRNA
Length=7086
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 ATTGAACTTAGCCA 17
||||||||||||||
Sbjct 851 ATTGAACTTAGCCA 864
> gi|1034670538|ref|XM_011518821.2| PREDICTED: Homo sapiens syntaxin
17 (STX17), transcript variant X2, mRNA
Length=7240
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 ATTGAACTTAGCCA 17
||||||||||||||
Sbjct 1005 ATTGAACTTAGCCA 1018
> gi|157388936|ref|NM_017919.2| Homo sapiens syntaxin 17 (STX17),
mRNA
Length=6910
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 ATTGAACTTAGCCA 17
||||||||||||||
Sbjct 674 ATTGAACTTAGCCA 687
> gi|1034688803|ref|XR_001743409.1| PREDICTED: Homo sapiens uncharacterized
LOC105373591 (LOC105373591), transcript variant
X4, ncRNA
Length=4690
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 GAACTTAGCCAGGA 20
||||||||||||||
Sbjct 1815 GAACTTAGCCAGGA 1802
> gi|1034688801|ref|XR_001743405.1| PREDICTED: Homo sapiens uncharacterized
LOC105373591 (LOC105373591), transcript variant
X2, ncRNA
Length=5653
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 GAACTTAGCCAGGA 20
||||||||||||||
Sbjct 2778 GAACTTAGCCAGGA 2765
> gi|1034688800|ref|XR_001743404.1| PREDICTED: Homo sapiens uncharacterized
LOC105373591 (LOC105373591), transcript variant
X1, ncRNA
Length=7570
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 GAACTTAGCCAGGA 20
||||||||||||||
Sbjct 3401 GAACTTAGCCAGGA 3388
> gi|1034671621|ref|XM_017015222.1| PREDICTED: Homo sapiens phosphatidylinositol
glycan anchor biosynthesis class O (PIGO),
transcript variant X2, mRNA
Length=7379
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TGAACTTAGCCAGG 19
||||||||||||||
Sbjct 5311 TGAACTTAGCCAGG 5298
> gi|1034671624|ref|XR_001746390.1| PREDICTED: Homo sapiens phosphatidylinositol
glycan anchor biosynthesis class O (PIGO),
transcript variant X4, misc_RNA
Length=7293
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TGAACTTAGCCAGG 19
||||||||||||||
Sbjct 5225 TGAACTTAGCCAGG 5212
> gi|1034671620|ref|XM_005251619.3| PREDICTED: Homo sapiens phosphatidylinositol
glycan anchor biosynthesis class O (PIGO),
transcript variant X1, mRNA
Length=6887
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TGAACTTAGCCAGG 19
||||||||||||||
Sbjct 4819 TGAACTTAGCCAGG 4806
> gi|1034671623|ref|XR_242515.2| PREDICTED: Homo sapiens phosphatidylinositol
glycan anchor biosynthesis class O (PIGO), transcript
variant X3, misc_RNA
Length=6894
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TGAACTTAGCCAGG 19
||||||||||||||
Sbjct 4823 TGAACTTAGCCAGG 4810
> gi|1034671629|ref|XR_001746391.1| PREDICTED: Homo sapiens phosphatidylinositol
glycan anchor biosynthesis class O (PIGO),
transcript variant X7, misc_RNA
Length=5643
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TGAACTTAGCCAGG 19
||||||||||||||
Sbjct 3572 TGAACTTAGCCAGG 3559
> gi|1034619408|ref|XR_001739689.1| PREDICTED: Homo sapiens uncharacterized
LOC105373591 (LOC105373591), transcript variant
X4, ncRNA
Length=4691
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 GAACTTAGCCAGGA 20
||||||||||||||
Sbjct 1815 GAACTTAGCCAGGA 1802
> gi|1034619406|ref|XR_001739687.1| PREDICTED: Homo sapiens uncharacterized
LOC105373591 (LOC105373591), transcript variant
X2, ncRNA
Length=5654
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 GAACTTAGCCAGGA 20
||||||||||||||
Sbjct 2778 GAACTTAGCCAGGA 2765
> gi|1034619405|ref|XR_001739686.1| PREDICTED: Homo sapiens uncharacterized
LOC105373591 (LOC105373591), transcript variant
X1, ncRNA
Length=7571
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 GAACTTAGCCAGGA 20
||||||||||||||
Sbjct 3401 GAACTTAGCCAGGA 3388
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2