BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCCACAACTGTGAAGTTAGAACTCGAGTTCTAACTTCACAGTTGTGGCTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|115529279|ref|NR_002944.2| Homo sapiens heterogeneous nuclea... 42.1 0.004
gi|58761497|ref|NM_001011725.1| Homo sapiens heterogeneous nucl... 42.1 0.004
gi|58761495|ref|NM_001011724.1| Homo sapiens heterogeneous nucl... 42.1 0.004
gi|1034579321|ref|XM_017019251.1| PREDICTED: Homo sapiens heter... 42.1 0.004
gi|530400150|ref|XR_245923.1| PREDICTED: Homo sapiens heterogen... 42.1 0.004
gi|530400151|ref|XM_005268826.1| PREDICTED: Homo sapiens hetero... 42.1 0.004
gi|994318938|ref|NM_002136.3| Homo sapiens heterogeneous nuclea... 42.1 0.004
gi|994318937|ref|NM_031157.3| Homo sapiens heterogeneous nuclea... 42.1 0.004
gi|994321657|ref|NR_135167.1| Homo sapiens heterogeneous nuclea... 42.1 0.004
gi|1034674303|ref|XM_011530954.2| PREDICTED: Homo sapiens XK re... 38.2 0.069
gi|119943148|ref|NR_003277.1| Homo sapiens heterogeneous nuclea... 36.2 0.27
gi|578836857|ref|XM_006724102.1| PREDICTED: Homo sapiens HMG-bo... 32.2 4.2
gi|239787903|ref|NM_001003681.2| Homo sapiens HMG-box containin... 32.2 4.2
gi|239787905|ref|NR_027780.1| Homo sapiens HMG-box containing 4... 32.2 4.2
gi|1034628097|ref|XM_006724101.3| PREDICTED: Homo sapiens HMG-b... 32.2 4.2
gi|1034628096|ref|XM_006724100.3| PREDICTED: Homo sapiens HMG-b... 32.2 4.2
gi|374349240|ref|NR_046227.1| Homo sapiens CPB2 antisense RNA 1... 32.2 4.2
gi|374349239|ref|NR_046226.1| Homo sapiens CPB2 antisense RNA 1... 32.2 4.2
> gi|115529279|ref|NR_002944.2| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 pseudogene 10 (HNRNPA1P10), non-coding
RNA
Length=1354
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCTAACTTCACAGTTGTGGC 48
|||||||||||||||||||||
Sbjct 594 TTCTAACTTCACAGTTGTGGC 574
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAGAA 21
|||||||||||||||||||||
Sbjct 574 GCCACAACTGTGAAGTTAGAA 594
> gi|58761497|ref|NM_001011725.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1-like 2 (HNRNPA1L2), transcript variant
2, mRNA
Length=2224
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCTAACTTCACAGTTGTGGC 48
|||||||||||||||||||||
Sbjct 1467 TTCTAACTTCACAGTTGTGGC 1447
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAGAA 21
|||||||||||||||||||||
Sbjct 1447 GCCACAACTGTGAAGTTAGAA 1467
> gi|58761495|ref|NM_001011724.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1-like 2 (HNRNPA1L2), transcript variant
1, mRNA
Length=2365
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCTAACTTCACAGTTGTGGC 48
|||||||||||||||||||||
Sbjct 1608 TTCTAACTTCACAGTTGTGGC 1588
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAGAA 21
|||||||||||||||||||||
Sbjct 1588 GCCACAACTGTGAAGTTAGAA 1608
> gi|1034579321|ref|XM_017019251.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript
variant X3, mRNA
Length=1702
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCTAACTTCACAGTTGTGGC 48
|||||||||||||||||||||
Sbjct 647 TTCTAACTTCACAGTTGTGGC 627
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAGAA 21
|||||||||||||||||||||
Sbjct 627 GCCACAACTGTGAAGTTAGAA 647
> gi|530400150|ref|XR_245923.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript variant
X1, misc_RNA
Length=1441
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCTAACTTCACAGTTGTGGC 48
|||||||||||||||||||||
Sbjct 647 TTCTAACTTCACAGTTGTGGC 627
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAGAA 21
|||||||||||||||||||||
Sbjct 627 GCCACAACTGTGAAGTTAGAA 647
> gi|530400151|ref|XM_005268826.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript
variant X2, mRNA
Length=1661
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCTAACTTCACAGTTGTGGC 48
|||||||||||||||||||||
Sbjct 647 TTCTAACTTCACAGTTGTGGC 627
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAGAA 21
|||||||||||||||||||||
Sbjct 627 GCCACAACTGTGAAGTTAGAA 647
> gi|994318938|ref|NM_002136.3| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 1, mRNA
Length=1799
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCTAACTTCACAGTTGTGGC 48
|||||||||||||||||||||
Sbjct 653 TTCTAACTTCACAGTTGTGGC 633
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAGAA 21
|||||||||||||||||||||
Sbjct 633 GCCACAACTGTGAAGTTAGAA 653
> gi|994318937|ref|NM_031157.3| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 2, mRNA
Length=1955
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCTAACTTCACAGTTGTGGC 48
|||||||||||||||||||||
Sbjct 653 TTCTAACTTCACAGTTGTGGC 633
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAGAA 21
|||||||||||||||||||||
Sbjct 633 GCCACAACTGTGAAGTTAGAA 653
> gi|994321657|ref|NR_135167.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 3, non-coding
RNA
Length=1324
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCTAACTTCACAGTTGTGGC 48
|||||||||||||||||||||
Sbjct 653 TTCTAACTTCACAGTTGTGGC 633
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAGAA 21
|||||||||||||||||||||
Sbjct 633 GCCACAACTGTGAAGTTAGAA 653
> gi|1034674303|ref|XM_011530954.2| PREDICTED: Homo sapiens XK
related, X-linked (XKRX), transcript variant X1, mRNA
Length=4149
Score = 38.2 bits (19), Expect = 0.069
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 30 CTAACTTCACAGTTGTGGC 48
|||||||||||||||||||
Sbjct 3010 CTAACTTCACAGTTGTGGC 2992
Score = 38.2 bits (19), Expect = 0.069
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 1 GCCACAACTGTGAAGTTAG 19
|||||||||||||||||||
Sbjct 2992 GCCACAACTGTGAAGTTAG 3010
> gi|119943148|ref|NR_003277.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 pseudogene 33 (HNRNPA1P33), non-coding
RNA
Length=542
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 30 CTAACTTCACAGTTGTGG 47
||||||||||||||||||
Sbjct 75 CTAACTTCACAGTTGTGG 58
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 CCACAACTGTGAAGTTAG 19
||||||||||||||||||
Sbjct 58 CCACAACTGTGAAGTTAG 75
> gi|578836857|ref|XM_006724102.1| PREDICTED: Homo sapiens HMG-box
containing 4 (HMGXB4), transcript variant X3, mRNA
Length=4119
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 35 TTCACAGTTGTGGCTT 50
||||||||||||||||
Sbjct 1584 TTCACAGTTGTGGCTT 1569
> gi|239787903|ref|NM_001003681.2| Homo sapiens HMG-box containing
4 (HMGXB4), transcript variant 1, mRNA
Length=4149
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 35 TTCACAGTTGTGGCTT 50
||||||||||||||||
Sbjct 1601 TTCACAGTTGTGGCTT 1586
> gi|239787905|ref|NR_027780.1| Homo sapiens HMG-box containing
4 (HMGXB4), transcript variant 2, non-coding RNA
Length=4264
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 35 TTCACAGTTGTGGCTT 50
||||||||||||||||
Sbjct 1716 TTCACAGTTGTGGCTT 1701
> gi|1034628097|ref|XM_006724101.3| PREDICTED: Homo sapiens HMG-box
containing 4 (HMGXB4), transcript variant X2, mRNA
Length=4092
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 35 TTCACAGTTGTGGCTT 50
||||||||||||||||
Sbjct 1680 TTCACAGTTGTGGCTT 1665
> gi|1034628096|ref|XM_006724100.3| PREDICTED: Homo sapiens HMG-box
containing 4 (HMGXB4), transcript variant X1, mRNA
Length=4215
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 35 TTCACAGTTGTGGCTT 50
||||||||||||||||
Sbjct 1680 TTCACAGTTGTGGCTT 1665
> gi|374349240|ref|NR_046227.1| Homo sapiens CPB2 antisense RNA
1 (CPB2-AS1), transcript variant 2, long non-coding RNA
Length=3218
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 22 CTCGAGTTCTAACTTC 37
||||||||||||||||
Sbjct 2799 CTCGAGTTCTAACTTC 2784
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 12 GAAGTTAGAACTCGAG 27
||||||||||||||||
Sbjct 2784 GAAGTTAGAACTCGAG 2799
> gi|374349239|ref|NR_046226.1| Homo sapiens CPB2 antisense RNA
1 (CPB2-AS1), transcript variant 1, long non-coding RNA
Length=3508
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 22 CTCGAGTTCTAACTTC 37
||||||||||||||||
Sbjct 3089 CTCGAGTTCTAACTTC 3074
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 12 GAAGTTAGAACTCGAG 27
||||||||||||||||
Sbjct 3074 GAAGTTAGAACTCGAG 3089
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2