BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCCAATATTCACTACGTATTACTCGAGTAATACGTAGTGAATATTGGCTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034656054|ref|XM_017012356.1| PREDICTED: Homo sapiens anill... 42.1 0.004
gi|1034656053|ref|XM_006715747.3| PREDICTED: Homo sapiens anill... 42.1 0.004
gi|1034656051|ref|XM_017012355.1| PREDICTED: Homo sapiens anill... 42.1 0.004
gi|1034656049|ref|XM_017012354.1| PREDICTED: Homo sapiens anill... 42.1 0.004
gi|578813548|ref|XM_006715746.1| PREDICTED: Homo sapiens anilli... 42.1 0.004
gi|697272151|ref|NM_001284302.2| Homo sapiens anillin actin bin... 42.1 0.004
gi|697272139|ref|NM_001284301.2| Homo sapiens anillin actin bin... 42.1 0.004
gi|697272137|ref|NM_018685.4| Homo sapiens anillin actin bindin... 42.1 0.004
> gi|1034656054|ref|XM_017012356.1| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X5, mRNA
Length=4664
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAATACGTAGTGAATATTGGC 48
|||||||||||||||||||||
Sbjct 3605 TAATACGTAGTGAATATTGGC 3585
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCAATATTCACTACGTATTA 21
|||||||||||||||||||||
Sbjct 3585 GCCAATATTCACTACGTATTA 3605
> gi|1034656053|ref|XM_006715747.3| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X4, mRNA
Length=4730
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAATACGTAGTGAATATTGGC 48
|||||||||||||||||||||
Sbjct 3671 TAATACGTAGTGAATATTGGC 3651
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCAATATTCACTACGTATTA 21
|||||||||||||||||||||
Sbjct 3651 GCCAATATTCACTACGTATTA 3671
> gi|1034656051|ref|XM_017012355.1| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X3, mRNA
Length=4775
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAATACGTAGTGAATATTGGC 48
|||||||||||||||||||||
Sbjct 3716 TAATACGTAGTGAATATTGGC 3696
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCAATATTCACTACGTATTA 21
|||||||||||||||||||||
Sbjct 3696 GCCAATATTCACTACGTATTA 3716
> gi|1034656049|ref|XM_017012354.1| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X2, mRNA
Length=4829
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAATACGTAGTGAATATTGGC 48
|||||||||||||||||||||
Sbjct 3770 TAATACGTAGTGAATATTGGC 3750
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCAATATTCACTACGTATTA 21
|||||||||||||||||||||
Sbjct 3750 GCCAATATTCACTACGTATTA 3770
> gi|578813548|ref|XM_006715746.1| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X1, mRNA
Length=4841
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAATACGTAGTGAATATTGGC 48
|||||||||||||||||||||
Sbjct 3782 TAATACGTAGTGAATATTGGC 3762
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCAATATTCACTACGTATTA 21
|||||||||||||||||||||
Sbjct 3762 GCCAATATTCACTACGTATTA 3782
> gi|697272151|ref|NM_001284302.2| Homo sapiens anillin actin binding
protein (ANLN), transcript variant 3, mRNA
Length=4690
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAATACGTAGTGAATATTGGC 48
|||||||||||||||||||||
Sbjct 3617 TAATACGTAGTGAATATTGGC 3597
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCAATATTCACTACGTATTA 21
|||||||||||||||||||||
Sbjct 3597 GCCAATATTCACTACGTATTA 3617
> gi|697272139|ref|NM_001284301.2| Homo sapiens anillin actin binding
protein (ANLN), transcript variant 2, mRNA
Length=4693
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAATACGTAGTGAATATTGGC 48
|||||||||||||||||||||
Sbjct 3620 TAATACGTAGTGAATATTGGC 3600
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCAATATTCACTACGTATTA 21
|||||||||||||||||||||
Sbjct 3600 GCCAATATTCACTACGTATTA 3620
> gi|697272137|ref|NM_018685.4| Homo sapiens anillin actin binding
protein (ANLN), transcript variant 1, mRNA
Length=4804
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TAATACGTAGTGAATATTGGC 48
|||||||||||||||||||||
Sbjct 3731 TAATACGTAGTGAATATTGGC 3711
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCCAATATTCACTACGTATTA 21
|||||||||||||||||||||
Sbjct 3711 GCCAATATTCACTACGTATTA 3731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2