BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCCAAGGTGCAACTCAGTATACTCGAGTATACTGAGTTGCACCTTGGCTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|38202203|ref|NM_016107.3| Homo sapiens zinc finger RNA bindi... 50.1 2e-05
gi|1034645242|ref|XR_427659.2| PREDICTED: Homo sapiens zinc fin... 50.1 2e-05
> gi|38202203|ref|NM_016107.3| Homo sapiens zinc finger RNA binding
protein (ZFR), mRNA
Length=4746
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%), Gaps = 0/25 (0%)
Strand=Plus/Minus
Query 25 GAGTATACTGAGTTGCACCTTGGCT 49
|||||||||||||||||||||||||
Sbjct 687 GAGTATACTGAGTTGCACCTTGGCT 663
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 GCCAAGGTGCAACTCAGTATACTC 24
||||||||||||||||||||||||
Sbjct 664 GCCAAGGTGCAACTCAGTATACTC 687
> gi|1034645242|ref|XR_427659.2| PREDICTED: Homo sapiens zinc finger
RNA binding protein (ZFR), transcript variant X1, misc_RNA
Length=4617
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%), Gaps = 0/25 (0%)
Strand=Plus/Minus
Query 25 GAGTATACTGAGTTGCACCTTGGCT 49
|||||||||||||||||||||||||
Sbjct 687 GAGTATACTGAGTTGCACCTTGGCT 663
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 GCCAAGGTGCAACTCAGTATACTC 24
||||||||||||||||||||||||
Sbjct 664 GCCAAGGTGCAACTCAGTATACTC 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2