BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCATGGTTACATTGGCGAATTCTCGAGAATTCGCCAATGTAACCATGCTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|71772358|ref|NM_001019.4| Homo sapiens ribosomal protein S15... 46.1 3e-04
gi|71772414|ref|NM_001030009.1| Homo sapiens ribosomal protein ... 46.1 3e-04
> gi|71772358|ref|NM_001019.4| Homo sapiens ribosomal protein S15a
(RPS15A), transcript variant 2, mRNA
Length=554
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 28 AATTCGCCAATGTAACCATGCTT 50
|||||||||||||||||||||||
Sbjct 245 AATTCGCCAATGTAACCATGCTT 223
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCATGGTTACATTGGCGAATT 21
|||||||||||||||||||||
Sbjct 225 GCATGGTTACATTGGCGAATT 245
> gi|71772414|ref|NM_001030009.1| Homo sapiens ribosomal protein
S15a (RPS15A), transcript variant 1, mRNA
Length=488
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 28 AATTCGCCAATGTAACCATGCTT 50
|||||||||||||||||||||||
Sbjct 179 AATTCGCCAATGTAACCATGCTT 157
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCATGGTTACATTGGCGAATT 21
|||||||||||||||||||||
Sbjct 159 GCATGGTTACATTGGCGAATT 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2