BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCAGCTGTTTCCAGAATATTGCTCGAGCAATATTCTGGAAACAGCTGC (evalue = 10)
Length=48
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034680495|ref|XR_252729.3| PREDICTED: Homo sapiens uncharac... 44.1 0.001
gi|1034680496|ref|XR_959381.2| PREDICTED: Homo sapiens uncharac... 44.1 0.001
gi|1034570924|ref|XR_242753.3| PREDICTED: Homo sapiens uncharac... 44.1 0.001
gi|1034570925|ref|XR_930808.2| PREDICTED: Homo sapiens uncharac... 44.1 0.001
gi|1034631459|ref|XM_011533431.2| PREDICTED: Homo sapiens conta... 32.2 3.6
> gi|1034680495|ref|XR_252729.3| PREDICTED: Homo sapiens uncharacterized
LOC101929447 (LOC101929447), transcript variant X1,
ncRNA
Length=1012
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GCAGCTGTTTCCAGAATATTGC 22
||||||||||||||||||||||
Sbjct 519 GCAGCTGTTTCCAGAATATTGC 540
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GCAATATTCTGGAAACAGCTGC 48
||||||||||||||||||||||
Sbjct 540 GCAATATTCTGGAAACAGCTGC 519
> gi|1034680496|ref|XR_959381.2| PREDICTED: Homo sapiens uncharacterized
LOC101929447 (LOC101929447), transcript variant X2,
ncRNA
Length=1153
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GCAGCTGTTTCCAGAATATTGC 22
||||||||||||||||||||||
Sbjct 660 GCAGCTGTTTCCAGAATATTGC 681
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GCAATATTCTGGAAACAGCTGC 48
||||||||||||||||||||||
Sbjct 681 GCAATATTCTGGAAACAGCTGC 660
> gi|1034570924|ref|XR_242753.3| PREDICTED: Homo sapiens uncharacterized
LOC101929447 (LOC101929447), transcript variant X1,
ncRNA
Length=1012
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GCAGCTGTTTCCAGAATATTGC 22
||||||||||||||||||||||
Sbjct 519 GCAGCTGTTTCCAGAATATTGC 540
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GCAATATTCTGGAAACAGCTGC 48
||||||||||||||||||||||
Sbjct 540 GCAATATTCTGGAAACAGCTGC 519
> gi|1034570925|ref|XR_930808.2| PREDICTED: Homo sapiens uncharacterized
LOC101929447 (LOC101929447), transcript variant X2,
ncRNA
Length=1153
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GCAGCTGTTTCCAGAATATTGC 22
||||||||||||||||||||||
Sbjct 660 GCAGCTGTTTCCAGAATATTGC 681
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GCAATATTCTGGAAACAGCTGC 48
||||||||||||||||||||||
Sbjct 681 GCAATATTCTGGAAACAGCTGC 660
> gi|1034631459|ref|XM_011533431.2| PREDICTED: Homo sapiens contactin
4 (CNTN4), transcript variant X14, mRNA
Length=9127
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 AGCTGTTTCCAGAATA 18
||||||||||||||||
Sbjct 2253 AGCTGTTTCCAGAATA 2268
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 31 TATTCTGGAAACAGCT 46
||||||||||||||||
Sbjct 2268 TATTCTGGAAACAGCT 2253
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 18107678429
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2