BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCAGCGGGAAGTCTATGTAAACTCGAGTTTACATAGACTTCCCGCTGCTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034568642|ref|XM_011539920.2| PREDICTED: Homo sapiens centr... 44.1 0.001
gi|187608536|ref|NM_018131.4| Homo sapiens centrosomal protein ... 44.1 0.001
gi|1034568640|ref|XM_017016372.1| PREDICTED: Homo sapiens centr... 44.1 0.001
gi|1034568643|ref|XM_017016373.1| PREDICTED: Homo sapiens centr... 44.1 0.001
gi|767963186|ref|XM_011539918.1| PREDICTED: Homo sapiens centro... 44.1 0.001
gi|187608544|ref|NM_001127182.1| Homo sapiens centrosomal prote... 44.1 0.001
gi|767963188|ref|XM_011539919.1| PREDICTED: Homo sapiens centro... 44.1 0.001
> gi|1034568642|ref|XM_011539920.2| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X4, mRNA
Length=2348
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTTACATAGACTTCCCGCTGCT 49
||||||||||||||||||||||
Sbjct 599 TTTACATAGACTTCCCGCTGCT 578
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCAGCGGGAAGTCTATGTAAA 21
|||||||||||||||||||||
Sbjct 579 GCAGCGGGAAGTCTATGTAAA 599
> gi|187608536|ref|NM_018131.4| Homo sapiens centrosomal protein
55 (CEP55), transcript variant 1, mRNA
Length=2656
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTTACATAGACTTCCCGCTGCT 49
||||||||||||||||||||||
Sbjct 891 TTTACATAGACTTCCCGCTGCT 870
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCAGCGGGAAGTCTATGTAAA 21
|||||||||||||||||||||
Sbjct 871 GCAGCGGGAAGTCTATGTAAA 891
> gi|1034568640|ref|XM_017016372.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X3, mRNA
Length=2494
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTTACATAGACTTCCCGCTGCT 49
||||||||||||||||||||||
Sbjct 745 TTTACATAGACTTCCCGCTGCT 724
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCAGCGGGAAGTCTATGTAAA 21
|||||||||||||||||||||
Sbjct 725 GCAGCGGGAAGTCTATGTAAA 745
> gi|1034568643|ref|XM_017016373.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X5, mRNA
Length=2516
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTTACATAGACTTCCCGCTGCT 49
||||||||||||||||||||||
Sbjct 767 TTTACATAGACTTCCCGCTGCT 746
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCAGCGGGAAGTCTATGTAAA 21
|||||||||||||||||||||
Sbjct 747 GCAGCGGGAAGTCTATGTAAA 767
> gi|767963186|ref|XM_011539918.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X1, mRNA
Length=2654
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTTACATAGACTTCCCGCTGCT 49
||||||||||||||||||||||
Sbjct 905 TTTACATAGACTTCCCGCTGCT 884
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCAGCGGGAAGTCTATGTAAA 21
|||||||||||||||||||||
Sbjct 885 GCAGCGGGAAGTCTATGTAAA 905
> gi|187608544|ref|NM_001127182.1| Homo sapiens centrosomal protein
55 (CEP55), transcript variant 2, mRNA
Length=2534
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTTACATAGACTTCCCGCTGCT 49
||||||||||||||||||||||
Sbjct 769 TTTACATAGACTTCCCGCTGCT 748
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCAGCGGGAAGTCTATGTAAA 21
|||||||||||||||||||||
Sbjct 749 GCAGCGGGAAGTCTATGTAAA 769
> gi|767963188|ref|XM_011539919.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X2, mRNA
Length=2522
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTTACATAGACTTCCCGCTGCT 49
||||||||||||||||||||||
Sbjct 773 TTTACATAGACTTCCCGCTGCT 752
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCAGCGGGAAGTCTATGTAAA 21
|||||||||||||||||||||
Sbjct 753 GCAGCGGGAAGTCTATGTAAA 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2