BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GCAAGGCCAGTGGAGTTAATCCTCGAGGATTAACTCCACTGGCCTTGC (evalue = 10)
Length=48
Score E
Sequences producing significant alignments: (Bits) Value
gi|532164759|ref|NR_026800.2| Homo sapiens KIAA0125 (KIAA0125),... 42.1 0.004
gi|825706206|ref|NR_131986.1| Homo sapiens renal clear cell car... 36.2 0.23
gi|1034681728|ref|XR_913502.2| PREDICTED: Homo sapiens uncharac... 32.2 3.6
gi|1034681732|ref|XR_001731949.1| PREDICTED: Homo sapiens uncha... 32.2 3.6
gi|1034681733|ref|XR_001731950.1| PREDICTED: Homo sapiens uncha... 32.2 3.6
gi|1034681729|ref|XR_913503.2| PREDICTED: Homo sapiens uncharac... 32.2 3.6
gi|1034681730|ref|XR_913504.2| PREDICTED: Homo sapiens uncharac... 32.2 3.6
gi|1034681731|ref|XR_001731948.1| PREDICTED: Homo sapiens uncha... 32.2 3.6
gi|1034577151|ref|XR_947991.2| PREDICTED: Homo sapiens uncharac... 32.2 3.6
gi|1034577155|ref|XR_001748364.1| PREDICTED: Homo sapiens uncha... 32.2 3.6
gi|1034577156|ref|XR_001748365.1| PREDICTED: Homo sapiens uncha... 32.2 3.6
gi|1034577152|ref|XR_947992.2| PREDICTED: Homo sapiens uncharac... 32.2 3.6
gi|1034577153|ref|XR_947993.2| PREDICTED: Homo sapiens uncharac... 32.2 3.6
gi|1034577154|ref|XR_001748363.1| PREDICTED: Homo sapiens uncha... 32.2 3.6
> gi|532164759|ref|NR_026800.2| Homo sapiens KIAA0125 (KIAA0125),
long non-coding RNA
Length=9643
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GCAAGGCCAGTGGAGTTAATC 21
|||||||||||||||||||||
Sbjct 6821 GCAAGGCCAGTGGAGTTAATC 6841
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 GATTAACTCCACTGGCCTTGC 48
|||||||||||||||||||||
Sbjct 6841 GATTAACTCCACTGGCCTTGC 6821
> gi|825706206|ref|NR_131986.1| Homo sapiens renal clear cell carcinoma-associated
transcript 198 (KCCAT198), long non-coding
RNA
Length=549
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 12 GGAGTTAATCCTCGAGGA 29
||||||||||||||||||
Sbjct 352 GGAGTTAATCCTCGAGGA 369
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 20 TCCTCGAGGATTAACTCC 37
||||||||||||||||||
Sbjct 369 TCCTCGAGGATTAACTCC 352
> gi|1034681728|ref|XR_913502.2| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant X1,
ncRNA
Length=8759
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2736 AATCCTCGAGGATTAA 2751
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2751 TTAATCCTCGAGGATT 2736
> gi|1034681732|ref|XR_001731949.1| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant
X5, ncRNA
Length=8671
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2736 AATCCTCGAGGATTAA 2751
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2751 TTAATCCTCGAGGATT 2736
> gi|1034681733|ref|XR_001731950.1| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant
X6, ncRNA
Length=8646
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2736 AATCCTCGAGGATTAA 2751
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2751 TTAATCCTCGAGGATT 2736
> gi|1034681729|ref|XR_913503.2| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant X2,
ncRNA
Length=7784
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2736 AATCCTCGAGGATTAA 2751
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2751 TTAATCCTCGAGGATT 2736
> gi|1034681730|ref|XR_913504.2| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant X3,
ncRNA
Length=10034
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2736 AATCCTCGAGGATTAA 2751
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2751 TTAATCCTCGAGGATT 2736
> gi|1034681731|ref|XR_001731948.1| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant
X4, ncRNA
Length=8118
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2736 AATCCTCGAGGATTAA 2751
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2751 TTAATCCTCGAGGATT 2736
> gi|1034577151|ref|XR_947991.2| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant X1,
ncRNA
Length=8761
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2737 AATCCTCGAGGATTAA 2752
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2752 TTAATCCTCGAGGATT 2737
> gi|1034577155|ref|XR_001748364.1| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant
X5, ncRNA
Length=8672
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2737 AATCCTCGAGGATTAA 2752
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2752 TTAATCCTCGAGGATT 2737
> gi|1034577156|ref|XR_001748365.1| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant
X6, ncRNA
Length=8647
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2737 AATCCTCGAGGATTAA 2752
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2752 TTAATCCTCGAGGATT 2737
> gi|1034577152|ref|XR_947992.2| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant X2,
ncRNA
Length=7786
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2737 AATCCTCGAGGATTAA 2752
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2752 TTAATCCTCGAGGATT 2737
> gi|1034577153|ref|XR_947993.2| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant X3,
ncRNA
Length=10035
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2737 AATCCTCGAGGATTAA 2752
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2752 TTAATCCTCGAGGATT 2737
> gi|1034577154|ref|XR_001748363.1| PREDICTED: Homo sapiens uncharacterized
LOC105369477 (LOC105369477), transcript variant
X4, ncRNA
Length=8120
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 AATCCTCGAGGATTAA 33
||||||||||||||||
Sbjct 2737 AATCCTCGAGGATTAA 2752
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 TTAATCCTCGAGGATT 31
||||||||||||||||
Sbjct 2752 TTAATCCTCGAGGATT 2737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 18107678429
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2