BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GATTTGGAAGAGGCGAGATAACTCGAGTTATCTCGCCTCTTCCAAATCTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034611107|ref|XM_017003182.1| PREDICTED: Homo sapiens ubiqu... 44.1 0.001
gi|767913679|ref|XM_011532487.1| PREDICTED: Homo sapiens ubiqui... 44.1 0.001
gi|767913678|ref|XM_006711923.2| PREDICTED: Homo sapiens ubiqui... 44.1 0.001
gi|767913677|ref|XR_939653.1| PREDICTED: Homo sapiens ubiquitin... 44.1 0.001
gi|767913676|ref|XR_939652.1| PREDICTED: Homo sapiens ubiquitin... 44.1 0.001
gi|376319200|ref|NM_001256726.1| Homo sapiens ubiquitin specifi... 44.1 0.001
gi|376319198|ref|NM_001256725.1| Homo sapiens ubiquitin specifi... 44.1 0.001
gi|376000080|ref|NM_006590.3| Homo sapiens ubiquitin specific p... 44.1 0.001
gi|767913681|ref|XM_011532488.1| PREDICTED: Homo sapiens ubiqui... 44.1 0.001
gi|1034611106|ref|XR_001738593.1| PREDICTED: Homo sapiens ubiqu... 44.1 0.001
gi|376319205|ref|NM_001256728.1| Homo sapiens ubiquitin specifi... 44.1 0.001
gi|376319202|ref|NM_001256727.1| Homo sapiens ubiquitin specifi... 44.1 0.001
gi|578802667|ref|XM_006711922.1| PREDICTED: Homo sapiens ubiqui... 44.1 0.001
gi|376319204|ref|NR_046347.1| Homo sapiens ubiquitin specific p... 44.1 0.001
gi|1034601808|ref|XM_006722149.3| PREDICTED: Homo sapiens sling... 32.2 4.2
gi|1034587594|ref|XM_017021468.1| PREDICTED: Homo sapiens prote... 32.2 4.2
> gi|1034611107|ref|XM_017003182.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X6,
mRNA
Length=2234
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1731 TTATCTCGCCTCTTCCAAATCT 1710
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1711 GATTTGGAAGAGGCGAGATAA 1731
> gi|767913679|ref|XM_011532487.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X7,
mRNA
Length=2230
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1727 TTATCTCGCCTCTTCCAAATCT 1706
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1707 GATTTGGAAGAGGCGAGATAA 1727
> gi|767913678|ref|XM_006711923.2| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X4,
mRNA
Length=2224
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1721 TTATCTCGCCTCTTCCAAATCT 1700
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1701 GATTTGGAAGAGGCGAGATAA 1721
> gi|767913677|ref|XR_939653.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X2, misc_RNA
Length=2164
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1824 TTATCTCGCCTCTTCCAAATCT 1803
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1804 GATTTGGAAGAGGCGAGATAA 1824
> gi|767913676|ref|XR_939652.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X1, misc_RNA
Length=2327
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1824 TTATCTCGCCTCTTCCAAATCT 1803
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1804 GATTTGGAAGAGGCGAGATAA 1824
> gi|376319200|ref|NM_001256726.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 3, mRNA
Length=2162
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1638 TTATCTCGCCTCTTCCAAATCT 1617
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1618 GATTTGGAAGAGGCGAGATAA 1638
> gi|376319198|ref|NM_001256725.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 2, mRNA
Length=2135
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1774 TTATCTCGCCTCTTCCAAATCT 1753
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1754 GATTTGGAAGAGGCGAGATAA 1774
> gi|376000080|ref|NM_006590.3| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 1, mRNA
Length=2298
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1774 TTATCTCGCCTCTTCCAAATCT 1753
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1754 GATTTGGAAGAGGCGAGATAA 1774
> gi|767913681|ref|XM_011532488.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X8,
mRNA
Length=2163
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1660 TTATCTCGCCTCTTCCAAATCT 1639
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1640 GATTTGGAAGAGGCGAGATAA 1660
> gi|1034611106|ref|XR_001738593.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X3,
misc_RNA
Length=2243
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1740 TTATCTCGCCTCTTCCAAATCT 1719
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1720 GATTTGGAAGAGGCGAGATAA 1740
> gi|376319205|ref|NM_001256728.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 5, mRNA
Length=2108
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1584 TTATCTCGCCTCTTCCAAATCT 1563
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1564 GATTTGGAAGAGGCGAGATAA 1584
> gi|376319202|ref|NM_001256727.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 4, mRNA
Length=2183
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1659 TTATCTCGCCTCTTCCAAATCT 1638
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1639 GATTTGGAAGAGGCGAGATAA 1659
> gi|578802667|ref|XM_006711922.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X5,
mRNA
Length=2145
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1642 TTATCTCGCCTCTTCCAAATCT 1621
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1622 GATTTGGAAGAGGCGAGATAA 1642
> gi|376319204|ref|NR_046347.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 6, non-coding RNA
Length=2186
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 28 TTATCTCGCCTCTTCCAAATCT 49
||||||||||||||||||||||
Sbjct 1662 TTATCTCGCCTCTTCCAAATCT 1641
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GATTTGGAAGAGGCGAGATAA 21
|||||||||||||||||||||
Sbjct 1642 GATTTGGAAGAGGCGAGATAA 1662
> gi|1034601808|ref|XM_006722149.3| PREDICTED: Homo sapiens slingshot
protein phosphatase 2 (SSH2), transcript variant X6,
mRNA
Length=12982
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 11 AGGCGAGATAACTCGA 26
||||||||||||||||
Sbjct 2814 AGGCGAGATAACTCGA 2799
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 23 TCGAGTTATCTCGCCT 38
||||||||||||||||
Sbjct 2799 TCGAGTTATCTCGCCT 2814
> gi|1034587594|ref|XM_017021468.1| PREDICTED: Homo sapiens proteasome
subunit alpha 6 (PSMA6), transcript variant X1, mRNA
Length=2405
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 37 CTCTTCCAAATCTTTT 52
||||||||||||||||
Sbjct 1039 CTCTTCCAAATCTTTT 1024
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2