BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GATCTTCCTTTGGCATCGAC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034638142|ref|XM_005262696.4| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638148|ref|XM_017007658.1| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638141|ref|XM_006714068.3| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638150|ref|XM_005262698.4| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638147|ref|XM_011531543.2| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638140|ref|XM_005262695.4| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638145|ref|XM_017007657.1| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638139|ref|XM_005262693.4| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638143|ref|XM_006714069.3| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638138|ref|XM_006714066.3| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|1034638144|ref|XM_006714070.3| PREDICTED: Homo sapiens PDZ a... 40.1 0.002
gi|374093211|ref|NM_001256428.1| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374093202|ref|NM_001256425.1| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374093200|ref|NM_001011513.3| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374093209|ref|NM_001256427.1| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374093207|ref|NM_001256426.1| Homo sapiens PDZ and LIM domai... 40.1 0.002
gi|374092019|ref|NM_006457.4| Homo sapiens PDZ and LIM domain 5... 40.1 0.002
gi|1034599033|ref|XM_017024424.1| PREDICTED: Homo sapiens HEAT ... 30.2 1.9
gi|767994217|ref|XR_934434.1| PREDICTED: Homo sapiens HEAT repe... 30.2 1.9
gi|1034599035|ref|XR_934432.2| PREDICTED: Homo sapiens HEAT rep... 30.2 1.9
gi|767994216|ref|XR_934433.1| PREDICTED: Homo sapiens HEAT repe... 30.2 1.9
gi|767994218|ref|XR_254513.3| PREDICTED: Homo sapiens HEAT repe... 30.2 1.9
gi|1034599032|ref|XM_011524586.2| PREDICTED: Homo sapiens HEAT ... 30.2 1.9
gi|767994211|ref|XM_005278233.2| PREDICTED: Homo sapiens HEAT r... 30.2 1.9
gi|1008909429|ref|NR_135630.1| Homo sapiens HEAT repeat contain... 30.2 1.9
gi|1008909288|ref|NM_152781.3| Homo sapiens HEAT repeat contain... 30.2 1.9
gi|1008909348|ref|NM_001321395.1| Homo sapiens HEAT repeat cont... 30.2 1.9
gi|530430094|ref|XM_005278235.1| PREDICTED: Homo sapiens HEAT r... 30.2 1.9
gi|229577137|ref|NM_001621.4| Homo sapiens aryl hydrocarbon rec... 30.2 1.9
gi|71834854|ref|NM_001030048.1| Homo sapiens kallikrein related... 28.2 7.3
gi|22208990|ref|NM_001648.2| Homo sapiens kallikrein related pe... 28.2 7.3
gi|71834852|ref|NM_001030047.1| Homo sapiens kallikrein related... 28.2 7.3
gi|1034581987|ref|XM_017020076.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581948|ref|XM_017020057.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581989|ref|XM_017020077.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|530399450|ref|XM_005253509.1| PREDICTED: Homo sapiens PPFIA ... 28.2 7.3
gi|1034581950|ref|XM_017020058.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|530399446|ref|XM_005253507.1| PREDICTED: Homo sapiens PPFIA ... 28.2 7.3
gi|1034581954|ref|XM_017020060.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|530399448|ref|XM_005253508.1| PREDICTED: Homo sapiens PPFIA ... 28.2 7.3
gi|530399442|ref|XM_005253505.1| PREDICTED: Homo sapiens PPFIA ... 28.2 7.3
gi|1034581985|ref|XM_017020075.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581982|ref|XM_006719159.3| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581946|ref|XM_017020056.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581972|ref|XM_017020069.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581978|ref|XM_017020072.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581968|ref|XM_017020067.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581974|ref|XM_017020070.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581962|ref|XM_017020064.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581976|ref|XM_017020071.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581966|ref|XM_017020066.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581964|ref|XM_017020065.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581956|ref|XM_017020061.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581991|ref|XM_017020078.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581983|ref|XM_017020074.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581958|ref|XM_017020062.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581970|ref|XM_017020068.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581980|ref|XM_017020073.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581960|ref|XM_017020063.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|1034581952|ref|XM_017020059.1| PREDICTED: Homo sapiens PPFIA... 28.2 7.3
gi|312032470|ref|NM_001198915.1| Homo sapiens PPFIA binding pro... 28.2 7.3
gi|312032472|ref|NM_001198916.1| Homo sapiens PPFIA binding pro... 28.2 7.3
gi|312032466|ref|NM_003622.3| Homo sapiens PPFIA binding protei... 28.2 7.3
gi|312032468|ref|NM_177444.2| Homo sapiens PPFIA binding protei... 28.2 7.3
gi|1034568492|ref|XM_017016335.1| PREDICTED: Homo sapiens panto... 28.2 7.3
gi|1034568496|ref|XM_017016337.1| PREDICTED: Homo sapiens panto... 28.2 7.3
gi|1034688398|ref|XR_001743074.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034619041|ref|XR_001739510.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
> gi|1034638142|ref|XM_005262696.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X5, mRNA
Length=6112
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1623 GATCTTCCTTTGGCATCGAC 1604
> gi|1034638148|ref|XM_017007658.1| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X10, mRNA
Length=5749
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1260 GATCTTCCTTTGGCATCGAC 1241
> gi|1034638141|ref|XM_006714068.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X4, mRNA
Length=6145
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1656 GATCTTCCTTTGGCATCGAC 1637
> gi|1034638150|ref|XM_005262698.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X11, mRNA
Length=5741
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1252 GATCTTCCTTTGGCATCGAC 1233
> gi|1034638147|ref|XM_011531543.2| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X9, mRNA
Length=6110
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1621 GATCTTCCTTTGGCATCGAC 1602
> gi|1034638140|ref|XM_005262695.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X3, mRNA
Length=6494
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 2005 GATCTTCCTTTGGCATCGAC 1986
> gi|1034638145|ref|XM_017007657.1| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X8, mRNA
Length=6116
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1627 GATCTTCCTTTGGCATCGAC 1608
> gi|1034638139|ref|XM_005262693.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X2, mRNA
Length=6512
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 2023 GATCTTCCTTTGGCATCGAC 2004
> gi|1034638143|ref|XM_006714069.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X6, mRNA
Length=6131
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1642 GATCTTCCTTTGGCATCGAC 1623
> gi|1034638138|ref|XM_006714066.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X1, mRNA
Length=6527
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 2038 GATCTTCCTTTGGCATCGAC 2019
> gi|1034638144|ref|XM_006714070.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X7, mRNA
Length=6128
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1639 GATCTTCCTTTGGCATCGAC 1620
> gi|374093211|ref|NM_001256428.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 8, mRNA
Length=5980
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1487 GATCTTCCTTTGGCATCGAC 1468
> gi|374093202|ref|NM_001256425.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 3, mRNA
Length=5713
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1220 GATCTTCCTTTGGCATCGAC 1201
> gi|374093200|ref|NM_001011513.3| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 2, mRNA
Length=5805
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1312 GATCTTCCTTTGGCATCGAC 1293
> gi|374093209|ref|NM_001256427.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 7, mRNA
Length=3834
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1330 GATCTTCCTTTGGCATCGAC 1311
> gi|374093207|ref|NM_001256426.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 6, mRNA
Length=6219
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1726 GATCTTCCTTTGGCATCGAC 1707
> gi|374092019|ref|NM_006457.4| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 1, mRNA
Length=6132
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGCATCGAC 20
||||||||||||||||||||
Sbjct 1639 GATCTTCCTTTGGCATCGAC 1620
> gi|1034599033|ref|XM_017024424.1| PREDICTED: Homo sapiens HEAT
repeat containing 9 (HEATR9), transcript variant X3, mRNA
Length=1837
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 281 TCTTCCTTTGGCATC 267
> gi|767994217|ref|XR_934434.1| PREDICTED: Homo sapiens HEAT repeat
containing 9 (HEATR9), transcript variant X8, misc_RNA
Length=1962
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 273 TCTTCCTTTGGCATC 259
> gi|1034599035|ref|XR_934432.2| PREDICTED: Homo sapiens HEAT repeat
containing 9 (HEATR9), transcript variant X5, misc_RNA
Length=2090
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 281 TCTTCCTTTGGCATC 267
> gi|767994216|ref|XR_934433.1| PREDICTED: Homo sapiens HEAT repeat
containing 9 (HEATR9), transcript variant X7, misc_RNA
Length=2069
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 260 TCTTCCTTTGGCATC 246
> gi|767994218|ref|XR_254513.3| PREDICTED: Homo sapiens HEAT repeat
containing 9 (HEATR9), transcript variant X9, misc_RNA
Length=1954
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 265 TCTTCCTTTGGCATC 251
> gi|1034599032|ref|XM_011524586.2| PREDICTED: Homo sapiens HEAT
repeat containing 9 (HEATR9), transcript variant X2, mRNA
Length=1922
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 244 TCTTCCTTTGGCATC 230
> gi|767994211|ref|XM_005278233.2| PREDICTED: Homo sapiens HEAT
repeat containing 9 (HEATR9), transcript variant X1, mRNA
Length=1938
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 260 TCTTCCTTTGGCATC 246
> gi|1008909429|ref|NR_135630.1| Homo sapiens HEAT repeat containing
9 (HEATR9), transcript variant 3, non-coding RNA
Length=2039
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 301 TCTTCCTTTGGCATC 287
> gi|1008909288|ref|NM_152781.3| Homo sapiens HEAT repeat containing
9 (HEATR9), transcript variant 1, mRNA
Length=1995
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 301 TCTTCCTTTGGCATC 287
> gi|1008909348|ref|NM_001321395.1| Homo sapiens HEAT repeat containing
9 (HEATR9), transcript variant 2, mRNA
Length=1875
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 301 TCTTCCTTTGGCATC 287
> gi|530430094|ref|XM_005278235.1| PREDICTED: Homo sapiens HEAT
repeat containing 9 (HEATR9), transcript variant X4, mRNA
Length=1823
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 265 TCTTCCTTTGGCATC 251
> gi|229577137|ref|NM_001621.4| Homo sapiens aryl hydrocarbon receptor
(AHR), mRNA
Length=6247
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 TCTTCCTTTGGCATC 17
|||||||||||||||
Sbjct 1528 TCTTCCTTTGGCATC 1514
> gi|71834854|ref|NM_001030048.1| Homo sapiens kallikrein related
peptidase 3 (KLK3), transcript variant 4, mRNA
Length=1335
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCTTCCTTTGGCAT 16
||||||||||||||
Sbjct 1177 TCTTCCTTTGGCAT 1190
> gi|22208990|ref|NM_001648.2| Homo sapiens kallikrein related
peptidase 3 (KLK3), transcript variant 1, mRNA
Length=1464
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCTTCCTTTGGCAT 16
||||||||||||||
Sbjct 1306 TCTTCCTTTGGCAT 1319
> gi|71834852|ref|NM_001030047.1| Homo sapiens kallikrein related
peptidase 3 (KLK3), transcript variant 3, mRNA
Length=1906
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TCTTCCTTTGGCAT 16
||||||||||||||
Sbjct 1748 TCTTCCTTTGGCAT 1761
> gi|1034581987|ref|XM_017020076.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X26, mRNA
Length=4855
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 669 GATCTTCCTTTGGC 682
> gi|1034581948|ref|XM_017020057.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X3, mRNA
Length=6364
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 2178 GATCTTCCTTTGGC 2191
> gi|1034581989|ref|XM_017020077.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X27, mRNA
Length=2106
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1687 GATCTTCCTTTGGC 1700
> gi|530399450|ref|XM_005253509.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X6, mRNA
Length=5840
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1654 GATCTTCCTTTGGC 1667
> gi|1034581950|ref|XM_017020058.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X7, mRNA
Length=5834
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1648 GATCTTCCTTTGGC 1661
> gi|530399446|ref|XM_005253507.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X4, mRNA
Length=5864
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1678 GATCTTCCTTTGGC 1691
> gi|1034581954|ref|XM_017020060.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X9, mRNA
Length=5810
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1657 GATCTTCCTTTGGC 1670
> gi|530399448|ref|XM_005253508.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X5, mRNA
Length=5843
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1657 GATCTTCCTTTGGC 1670
> gi|530399442|ref|XM_005253505.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X1, mRNA
Length=5873
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1687 GATCTTCCTTTGGC 1700
> gi|1034581985|ref|XM_017020075.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X25, mRNA
Length=5679
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1526 GATCTTCCTTTGGC 1539
> gi|1034581982|ref|XM_006719159.3| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X23, mRNA
Length=5827
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1641 GATCTTCCTTTGGC 1654
> gi|1034581946|ref|XM_017020056.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X2, mRNA
Length=6189
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 2003 GATCTTCCTTTGGC 2016
> gi|1034581972|ref|XM_017020069.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X18, mRNA
Length=6004
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1818 GATCTTCCTTTGGC 1831
> gi|1034581978|ref|XM_017020072.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X21, mRNA
Length=5980
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1827 GATCTTCCTTTGGC 1840
> gi|1034581968|ref|XM_017020067.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X16, mRNA
Length=6013
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1827 GATCTTCCTTTGGC 1840
> gi|1034581974|ref|XM_017020070.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X19, mRNA
Length=6004
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1851 GATCTTCCTTTGGC 1864
> gi|1034581962|ref|XM_017020064.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X13, mRNA
Length=6037
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1851 GATCTTCCTTTGGC 1864
> gi|1034581976|ref|XM_017020071.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X20, mRNA
Length=5983
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1830 GATCTTCCTTTGGC 1843
> gi|1034581966|ref|XM_017020066.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X15, mRNA
Length=6016
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1830 GATCTTCCTTTGGC 1843
> gi|1034581964|ref|XM_017020065.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X14, mRNA
Length=6034
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1881 GATCTTCCTTTGGC 1894
> gi|1034581956|ref|XM_017020061.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X10, mRNA
Length=6097
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1944 GATCTTCCTTTGGC 1957
> gi|1034581991|ref|XM_017020078.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X28, mRNA
Length=2323
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1865 GATCTTCCTTTGGC 1878
> gi|1034581983|ref|XM_017020074.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X24, mRNA
Length=5781
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1628 GATCTTCCTTTGGC 1641
> gi|1034581958|ref|XM_017020062.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X11, mRNA
Length=6087
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1934 GATCTTCCTTTGGC 1947
> gi|1034581970|ref|XM_017020068.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X17, mRNA
Length=6029
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1876 GATCTTCCTTTGGC 1889
> gi|1034581980|ref|XM_017020073.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X22, mRNA
Length=5991
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1838 GATCTTCCTTTGGC 1851
> gi|1034581960|ref|XM_017020063.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X12, mRNA
Length=6060
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1907 GATCTTCCTTTGGC 1920
> gi|1034581952|ref|XM_017020059.1| PREDICTED: Homo sapiens PPFIA
binding protein 1 (PPFIBP1), transcript variant X8, mRNA
Length=6123
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1970 GATCTTCCTTTGGC 1983
> gi|312032470|ref|NM_001198915.1| Homo sapiens PPFIA binding protein
1 (PPFIBP1), transcript variant 3, mRNA
Length=5807
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1637 GATCTTCCTTTGGC 1650
> gi|312032472|ref|NM_001198916.1| Homo sapiens PPFIA binding protein
1 (PPFIBP1), transcript variant 4, mRNA
Length=6019
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1849 GATCTTCCTTTGGC 1862
> gi|312032466|ref|NM_003622.3| Homo sapiens PPFIA binding protein
1 (PPFIBP1), transcript variant 1, mRNA
Length=6094
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1891 GATCTTCCTTTGGC 1904
> gi|312032468|ref|NM_177444.2| Homo sapiens PPFIA binding protein
1 (PPFIBP1), transcript variant 2, mRNA
Length=6112
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 1942 GATCTTCCTTTGGC 1955
> gi|1034568492|ref|XM_017016335.1| PREDICTED: Homo sapiens pantothenate
kinase 1 (PANK1), transcript variant X3, mRNA
Length=4243
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 ATCTTCCTTTGGCA 15
||||||||||||||
Sbjct 1399 ATCTTCCTTTGGCA 1412
> gi|1034568496|ref|XM_017016337.1| PREDICTED: Homo sapiens pantothenate
kinase 1 (PANK1), transcript variant X5, mRNA
Length=4149
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 ATCTTCCTTTGGCA 15
||||||||||||||
Sbjct 969 ATCTTCCTTTGGCA 982
> gi|1034688398|ref|XR_001743074.1| PREDICTED: Homo sapiens uncharacterized
LOC105374780 (LOC105374780), transcript variant
X5, ncRNA
Length=2671
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 527 GATCTTCCTTTGGC 514
> gi|1034619041|ref|XR_001739510.1| PREDICTED: Homo sapiens uncharacterized
LOC105374780 (LOC105374780), transcript variant
X5, ncRNA
Length=2671
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GATCTTCCTTTGGC 14
||||||||||||||
Sbjct 527 GATCTTCCTTTGGC 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2